Strigops habroptila (Kakapo): 115606900
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Entry
115606900 CDS
T08851
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04140
Autophagy - animal
shab04142
Lysosome biogenesis
shab04145
Phagocytosis
shab04148
Efferocytosis
shab05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
115606900 (VPS18)
04142 Lysosome biogenesis
115606900 (VPS18)
04140 Autophagy - animal
115606900 (VPS18)
04148 Efferocytosis
115606900 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115606900 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115606900 (VPS18)
Membrane trafficking [BR:
shab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115606900 (VPS18)
Hops complex
115606900 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_Vps41
aq_1631
zf-RING_16
zf-RING_5
zf-RING_11
Lact-deh-memb
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
zf_RING_Vps8
DUF8221
Nup54_57_C
LETM1_C
STX17_N
DUF5600
RBSN_mid
zf-rbx1
DUF1664
KNOX2
Motif
Other DBs
NCBI-GeneID:
115606900
NCBI-ProteinID:
XP_030339380
UniProt:
A0A672TUT1
LinkDB
All DBs
Position
4:6932337..6948252
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLYRSAAAQHSRASVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEAKVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGTETNTGPVLVGTAQGQIYEAEISVSEGS
LFSTNPDQYFRQVYTLEEESGPAPVCCLEIERGIEGKFFIIATTQKRLFQFVGKVPEGTE
QQGFSSIFALHADHLPSFREFPASFGFSEIAFYTPKLRSNPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPSDIDITVNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDMFL
EKFGLLTRMIKDPTVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLSNL
KPSEKTQTTLLTTWLTELYLNWLGILEGNPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHHACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKSHHRPKDADTISLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctatcctggacgagtacgaggactcgctgtaccgctccgccgccgcgcagcac
agccgcgccagcgtgggcatcccgcactccggatatgtgaatgcacgtctggagaaggaa
acaccaatatttaacaagcaaaggattgattttgctcctccagagaaaattaacagctta
gtggtctcctctaaccagctgtgtatgagccttggcaaagacacccttctcaggattgat
cttgggaagccagatgaacctaatcaagtagagctgggacgcaaagatgaagcgaaagtc
tacaagatgtttttggaccacacaggctctcatctcctgattgctctgaacaccagtgaa
tgcctttacctgaacagaagtgttcagaaagtgcgagcgctctcccgctggaaaggccac
ttgattgaaagtgtgggctggaacaaattccttggtacagagaccaacactgggcctgtc
ctggtggggacagcccaggggcagatctatgaggctgaaatctctgtcagcgagggaagc
ctcttcagtactaatcccgaccagtacttccgacaggtctacactctggaggaggaatca
ggacctgccccagtctgctgcttggagattgaacgaggaatagaagggaaattttttatt
atagccaccactcaaaagagacttttccagtttgttggcaaagtgcctgaagggacagag
cagcaaggcttcagctccatatttgctttgcatgctgaccatttgccaagcttccgggag
tttccagccagctttggtttcagtgagatagccttttacaccccaaaactgcgctccaac
ccacgctcctttgcctggatgatgggaaatggtgttttatatggtacgctggattatagc
cgtcctgattcaattttgagtgatgaacgggtctgggtttatccttctgatattgacata
actgtgaacaagccaatatccattgtacttacccagttccacttcttgttgctgctgcct
gatcgagtgaaggctgtatgcactctgaatggacaggttgtttttcaagatatgttcctg
gagaagtttggtttactgacacgcatgatcaaagatcccacagtccagcagatctggatc
cacactgagaaagtggtgttccgctaccacgtccagcgggaatctagagatgtgtggaag
atgtatatgaatatgaacaaatttgatttagccaaagagtattgtaaagaccgtccagag
tgcctagatattgtgctggcaaaggaggcagagcactgcttccaaaacaagaggtatcta
gacagtgccaagtgttatgcactgacccagaactactttgaggaaattgcccttaagttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaagctaagtaaccta
aagccttctgagaagacacagaccactctgctgaccacgtggttaacggagctgtacctg
aactggttgggtatattggaaggaaacccctcacagcgaaatctctatctggatacacgg
gagaagtttcgcacgttcctgagcagtcctaaaaacaaagactgtctgtttaataacagg
gcatctatttatgagctgctggcaagccatggggacacagagcacatggtctactttgca
gtcatcatgcaggactatgagcgtgtagtagctcaccactgccagcatgatgagtacgat
gaggctctaaatgtgctgtccaggcacagagacgagaaactgttctacaagttctctcca
gtcctcatccagcatattcccaagaaggtagttgatgcttggatttctatgggctctaga
ctggatgctaggaacctcattccggcccttgttaactatagccagagtgccagcacccag
cagatcaatgaagccattagatatatggagttctgtgtctatcagttggaggaaacccag
caagccattcacaactacctgttgtctctttatgctttgtgtcggccggactcgctgcta
tcatacctggagcaagcaggaaccaacccaaacaggatccactatgacctgaagtatgca
ttacgcctgtgcgcagagcatgggcaccaccatgcatgtgtccatatttacaaagtgatg
gaattatatgaggaggctgtggatcttgccttacaggtggatgttgatcttgccaagtcc
tgtgcagatctccctgaagatgatgaggaactccgaaagaagctctggttgaagattgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcgatggcctgcctctccagctgt
gccctgctgaagattgaagatgtcttgccattcttcccagactttgtcactattgaccat
ttcaaggaggcaatctgtaactccctggaggactacaacaagcacattgaggagctgaaa
agggagatggaggaagccacgcagagtgccaagagaatccgagaggacatccaggaaatg
agaaataaatacggctctgtggagcctcaggaaaaatgtgctgcttgtgacttcccactt
ctaaaccgccctttttaccttttcctgtgtggtcacatgtttcactatgactgtctcctc
caagcagtgttcccaaaccttcctgcctacaaacaggcaaaacttgaagatcttcagaag
aagctggcagctaccagtcagccttccaagagccaccatcgtcccaaggacgcagatacc
attagcttggggaaggggcagcagagccgggaacagatcaaagctgacattgatgatatt
gtggcagctgaatgtgtgtactgtggtgagctgatgatccggtcaattgacaagcctttt
attgatccccagaagtatgaagaggagatgcagagctggctgtag
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