Strigops habroptila (Kakapo): 115607250
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Entry
115607250 CDS
T08851
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03430
Mismatch repair
shab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115607250 (PMS2)
03460 Fanconi anemia pathway
115607250 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shab03400
]
115607250 (PMS2)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
115607250 (PMS2)
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
115607250
NCBI-ProteinID:
XP_030340198
UniProt:
A0A672TUQ5
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Position
4:78550881..78563637
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AA seq
877 aa
AA seq
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MEAAAPCLEPAKAIKPIDPKSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDY
GAELIEVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGKITQKTPFPRPQGTTVNIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIVSKGVRINCTNQVGQGKKSSVVSTTGSPSLKENIGAVFGQKQLQSLIP
FVQLPPNEAVCEEYGVNATDMPQNLYSITGFISSCDHGVGRSATDRQFFFINQRPCDPAK
VVKLVNEVYHVYNKHQYPFVVLNICVDSECVDINVTPDKRQILLQEEKLLLAILKTSLLK
MFGSDVNKLNVNQKLLDVAGNLKKTLPEETEKPQAEMLPDSETENPSGEGKRIMTLSRLR
ESFSLSQTSQSNFRSPKNVKQQHSSPRQMSLDTTLSAMKTQKAVLTREPKSCHKMDSKMS
TPSRYLRKLEDNADSGFCSTSESDAGCSTPEAGTCVGNESIINLCEEEFRSSEEKLQNEC
FRTVGCSEKSLDCDVQDLGAEHKLNQGIDWTDQNKLSQESGSSSPRKKRFKSRSFRSEVD
NFKAGKCPEVKNTTNYKSTVDVLVEVKKKTVPLEFSMKVLVEKVKKVTEQQQKSTETQNY
RRFKAKISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDE
KYNFEMLQQHTVLQGQKLIVPQNLNLTAVNENILIENLEIFRKNGFDFVINENAPVTQRV
KLISLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQ
EMRKLITHMGEIEHPWNCPHGRPTMRHMVSLDLISTE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcagcgccctgcctcgaacctgccaaagccatcaagcccatcgaccctaag
tccgttcaccggatctgttcggggcaggttgtgctcaatcttggcactgccgtgaaggag
ttggtggagaacagcctggatgctggagctaccaacattgatataaaacttaaagattat
ggagctgaactgatagaggtttcagataatggaggtggagtggaagaggaaaactttgaa
ggcttgactctgaaacattatacatcgaagatacaagatttttctgatctaatacatgtt
gaaacatttgggtttcgaggtgaagctctgagttcactgtgtgcattaagtgatgttacc
atttttacgtgtcataagtctgcaaaggttgggactcggctggtatttgatcacaatggt
aaaattactcagaaaacaccttttccacggccacaaggaacgactgtgaacatacagcag
ttgttttatactctgcctgtgcggcataaggaatttcaaagaaacattaaaaaggaatat
gcaaaaatggtccagctcttgcaggcatactgtattgtttcaaaaggagtgaggattaac
tgcactaatcaagttggccaagggaaaaaaagctctgtggtgtccactactgggagtcct
agtttaaaggaaaacattggagcagtatttgggcaaaagcagttgcagagcctcattcct
tttgttcagctacctcctaatgaagctgtttgtgaagaatatggagtcaatgctactgac
atgccacagaatctttatagtattacaggcttcatctctagctgtgatcatggtgttgga
aggagcgcaacagacagacagtttttctttatcaaccaacgtccatgtgatccagcaaag
gttgtcaaacttgtgaatgaagtttatcatgtatataataaacaccagtatccatttgtt
gtcctaaacatttgtgtagattctgagtgtgttgacatcaatgtaactccagacaaaagg
caaattttacttcaggaggagaagcttttattagcaattttaaaaacctctctgctgaag
atgtttgggagtgacgttaacaaactgaatgtcaatcagaaacttctggacgttgcaggc
aacttgaagaaaacacttcctgaagagacagaaaagcctcaggcagaaatgctgcctgac
tctgaaactgaaaatccaagtggtgaaggaaaaagaataatgactctttccagattaagg
gagtcattctctctcagtcaaacatcacagagtaattttcgaagccctaaaaatgtaaaa
cagcagcacagctcccctagacaaatgtcacttgataccactttgagtgctatgaagact
caaaaggctgtcttgactagggagcccaagagttgccataagatggactcaaagatgtca
actccaagcagatatttgaggaaattggaagataatgcagattctggattttgtagcact
tctgagtcagatgctggatgtagcacaccagaagctgggacctgcgtcggtaacgaaagt
ataattaatctttgtgaagaagaattccgtagctcagaagaaaaacttcagaatgaatgt
tttagaactgttggatgtagcgagaaatcattggactgtgatgttcaggacttgggtgct
gaacataagttaaatcaagggattgactggactgatcaaaataagttatctcaagaatct
ggtagttcttccccaaggaaaaaacgttttaaaagcagaagctttagaagtgaagtggac
aactttaaggcaggcaaatgtcctgaagtgaagaatactacaaactataagtcaactgtt
gatgtactggtggaagttaaaaagaagactgtgccacttgaattctctatgaaggtttta
gtggaaaaggtaaaaaaggtaacagagcaacaacagaaaagtacagaaacacaaaattac
agaagatttaaagcaaaaattagtcctggagaaaataaagtagcagaagatgaattgaga
aaagagatcagtaaagaaatgtttgcgaaaatggaaatcattggccagttcaatttaggg
tttattatagcaaagttgaattctgatcttttcataattgaccaacatgctactgatgag
aagtacaactttgagatgttacaacaacacactgttcttcaaggtcagaagctgatagtg
cctcaaaatctcaatctaacggctgtaaatgaaaatatactgattgaaaacctggaaata
ttcagaaaaaatggctttgattttgtcataaatgaaaatgctcctgtaactcaaagagtt
aaattaatatcgttgccaacaagcaaaaactggacttttggtccacaagacatagatgag
ctgatcttcatgttaagtgactgccctggagtcatgtgtaggccctccagggtcaggcag
atgtttgcttctcgagcttgcagaaagtctgtgatgattggaactgcactgaatgtgcag
gaaatgagaaaactgatcacccatatgggtgagattgagcatccctggaactgcccccat
ggaaggcctactatgagacacatggtcagtttagacttgatttcaacagaataa
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