Strigops habroptila (Kakapo): 115607405
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Entry
115607405 CDS
T08851
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
115607405 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
shab01001
]
115607405 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
shab04054
]
115607405 (CIITA)
Enzymes [BR:
shab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115607405 (CIITA)
Protein kinases [BR:
shab01001
]
Serine/threonine kinases: Other
TAF1 family
115607405 (CIITA)
Pattern recognition receptors [BR:
shab04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
115607405 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
LRR_8
NB-ARC
LRR_9
NPHP3_N
nSTAND3
RsgA_GTPase
AAA
AAA_22
AAA_14
AAA_16
Motif
Other DBs
NCBI-GeneID:
115607405
NCBI-ProteinID:
XP_030340527
LinkDB
All DBs
Position
4:complement(71630244..71659110)
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AA seq
1189 aa
AA seq
DB search
MNLFKDVLPRIRKILSTDRASDXNIRLKEDVISKEYHQALLHGKDRGDLARKISLIFVEK
WDLCLNTLVPLCCLNLHVSKPQNMTDNEPTGRNYISDIRRQIMDSTFLSENGYLDLLHSD
IDPLHLYTQLDLKLSGNEEGDFFADSEVDASDYDQFNMDFLYTMENSENGDELDLCSTKE
DYARIAGLAEYVLKDQQEKQVEDTFAGNLILDEIAAENTEVLPEIKVQKCHKRTFLGSAE
SCCDASEPKYRKIVEVPAVSAGNGSFLAMPLNSHPASSTSLTNQHMSFSVLATDALERSF
IISGSSAPLIPECLSVGVKGSQENTGFADPPQQILGFVLGNGTSDVLIYPGLEMLKEVQV
PIIPSEEPFKRPKPVEAFCTSLKHYFQDVCRSVAMEREVALDHLFIDGTLVQSQTETKTG
KNSIKAMEKELVTCSLQGKEKAGLKRSQIFQIPAGKDLETKVIVVLGKAGMGKSILVQKI
CQDWSNGEFSQFEFVFWFDCKQISLPEKQCSLKDLLLEFFVKPQEGSKEIFEYILQNPAK
VLLVFDGFEELHDHENFLRCSASQPEKDLCTIKELLSGLIQKKILNGCTLLLTARPKDKV
YQCVSKVDKTIEIIGFSPQQRELYVTKYFEGLPYCDNALKLIKECEYLFSHCYSPLMCRF
VCFLCEAVLEMGDKCLPSTLTTVLLKFLQQKIIPMQTDVAAMQNQESLATLARIAWYLGE
KHQSAMKSDLLPSKEVKEFALKYGFFLPFAFPRHSDSREEAFGSTFADFVIQNFLGALHL
MLAEEIKDKSLTKYLSFSSKKKKPYNWLDLVPRFLSGLLFLQDDPYFCSLSNKVVKQSIK
KQKTLLKCIRRLQINELCPERLLKLLQCIYETQSSYLLQHVALRLKPDLSFLGVVLTPPD
VHILHSILKRSRKEFSLDLRNSSIDMQGLKDLVGLKNVALFRASLSDTVRLWKSLEQAKD
YELLRASTEKFVLDPFKAKTMKDISDLSDLVGMQKKMIICVQDASGCSSYEIPAIKNLRK
LEFALGPVCGLRGFLKLVEILAAFPSLQHLDLDALSENGIGDEGAKSLSEAFPTLTSLET
LNLSQNKITDVGAEKLATALPSLSSLKTLSLYNNSICDFGAENLAKVLPAMASLRVLEVQ
YNKITGAGAQQLTDSLQKCPHIKKLVMWNPTIPYGVLEHLRQLDSRISV
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctttaaggatgttctacctagaataaggaagattctttcaactgatagagca
tctgatnntaacatcaggctgaaagaagatgtgatatccaaggaataccatcaagccttg
ctccatggaaaagacagaggggacctcgcaaggaagatatctctgatatttgtggaaaaa
tgggacctgtgcttgaacactttggttcccctctgttgtttaaacctccatgtcagtaag
cctcaaaacatgacagataatgagccaacaggaagaaattacatttctgacatcaggaga
caaatcatggattcgacatttctgtctgaaaatggctaccttgatttgctgcatagtgat
atcgatccattgcatctgtatactcaacttgatcttaagttatctggaaatgaagaaggt
gacttctttgcagattctgaagttgatgccagcgactatgatcagttcaatatggatttc
ttgtatacaatggaaaacagtgaaaatggggatgaattggatctctgttccaccaaagaa
gattatgctagaatagctggattagcagaatatgtgctcaaagatcagcaggagaagcag
gtggaagacacttttgcagggaaccttattttggatgaaatagctgccgaaaacacggag
gtgcttcctgagataaaggtgcagaaatgtcacaaacgaaccttcttaggctctgcagag
agttgctgtgatgcttcagaacccaaatacaggaaaattgtggaagtccctgcagtgtct
gcagggaatggcagtttcctagctatgcctctcaacagccacccagctagctccacctca
ctaactaaccagcatatgtccttttctgttcttgctaccgatgcgttggaaaggagtttc
attatttctggatcttcagcacctctgattccagagtgtctatctgttggcgtgaaaggg
agccaagagaatacaggttttgcagatcctcctcagcagatacttggctttgttcttgga
aacggcacatctgatgttctaatatatccaggtttagaaatgctcaaagaagtccaagtt
cccataattccttctgaagaacctttcaaaagaccaaagccagtggaagctttctgtaca
tcacttaagcattatttccaagatgtctgcagatctgtggccatggagcgtgaagtagct
cttgatcacctgtttattgatgggacacttgttcaaagccaaactgaaaccaagactggg
aagaatagcataaaagcaatggaaaaggagctggtaacatgcagtctgcaagggaaggaa
aaagcaggccttaaaagaagccaaatatttcaaatcccagcaggtaaagatttagagact
aaagtgattgtggtgctgggaaaagcaggaatgggcaaaagcattcttgttcagaagatc
tgccaggactggtccaatggagagttttctcagtttgaatttgtgttttggtttgactgc
aaacaaataagcttgcctgagaagcaatgcagcctgaaggatctgctgcttgaatttttt
gtaaaacctcaagagggaagcaaagagatctttgagtatatcttgcaaaatcctgctaaa
gtccttctggtttttgatggttttgaagagttgcatgatcatgagaattttcttcgttgc
tcagccagccagcctgaaaaagacttgtgcactataaaggagctgctttcagggctcatt
caaaaaaagatactcaatggttgtactttattacttacagcaagaccaaaagacaaggtg
taccagtgtgtgtccaaagtggataagactattgaaataataggattttcccctcagcag
agagaattgtatgtaaccaaatactttgaaggattaccctactgtgataatgcactgaaa
ttaatcaaagagtgtgagtacttgttcagtcattgttacagccctcttatgtgtagattt
gtttgttttctctgtgaggcagtacttgaaatgggagacaagtgtcttccttcaactctt
actacagtcttactgaaatttcttcagcagaagataatacctatgcaaacagatgttgca
gccatgcaaaatcaagaaagtcttgctacacttgcccgtatagcctggtatcttggagaa
aagcaccaaagtgctatgaaaagtgatcttctcccttctaaggaagttaaagagtttgct
ctgaaatatggatttttcctgccatttgcattccccagacattcagatagtagagaagag
gcatttggaagcacattcgctgattttgtcattcagaatttcttgggtgcacttcacctt
atgttagcagaagagatcaaggataaaagtctaacaaaatacctgtctttttcatccaag
aagaaaaagccttataattggttagatttagtgcctcgatttttgtccggattgttgttc
ctccaggatgacccctacttctgctccctttcaaataaggttgtaaaacagtcaatcaag
aagcagaaaacactgttgaaatgtattagaaggctgcagataaatgagctctgtccagag
aggttactcaagctcttacaatgtatttatgaaacacaaagcagttatcttttgcagcat
gtggccttaaggctcaagccagacctgtcttttctgggtgtagttctgacaccacctgat
gtccatatactgcactctattttaaaaaggtcaaggaaagagttttccttggatttgcga
aacagcagcattgacatgcaaggactgaaagacttggttggtctgaagaatgtggcattg
ttcagggcctccctcagtgatacagtcaggctctggaagtctttagaacaggcaaaagac
tatgaactgctgagagcatcaacagagaaatttgttcttgatccctttaaggcaaagaca
atgaaggacatcagtgacctttcagaccttgtgggtatgcagaagaagatgatcatttgt
gtgcaagatgcatctggttgcagcagctatgaaattcctgccatcaaaaacctcaggaaa
ctagaatttgcgctgggtccagtatgtggccttcggggattcttaaaactcgtggaaatt
cttgcagcatttccatcacttcagcatttagaccttgatgctctgagtgaaaatggcata
ggagatgaaggagcaaagagtctatctgaagcctttccaaccctgacatcactggaaaca
ttaaacttatcacagaataagataactgatgtgggtgctgagaagctagctacagctctt
ccttccctctcttcgttaaagactctaagcttatacaacaacagcatttgtgattttgga
gcagaaaatcttgccaaagttcttcctgcgatggcatctttgagagtgctagaagttcag
tataacaaaataactggtgctggagcccagcagctgactgacagcctgcaaaaatgtccc
catataaagaaattggtgatgtggaatcccaccattccctatggagttcttgaacacctt
cggcagctggactctaggatcagcgtgtag
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