Strigops habroptila (Kakapo): 115607473
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Entry
115607473 CDS
T08851
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
115607473 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shab04121
]
115607473 (SLX4)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115607473 (SLX4)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
115607473 (SLX4)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115607473 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
B129_C2H2-zf
zf-met
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
115607473
NCBI-ProteinID:
XP_030340657
UniProt:
A0A672TND2
LinkDB
All DBs
Position
4:complement(75661353..75693248)
Genome browser
AA seq
1881 aa
AA seq
DB search
MDEQDNDFKELWANILGRGKKKAGDAEVAKRAQKRPKSTAAGSRLRRGKAPAKSQNHHHL
PAVKETYFPQDLGPKEQRLVHKEDGDAVACNGGEIVQGNGKTNPLSASQPSAVISECSQR
TLSVNTLRGCSQTTLSFHPATQPGTCSSPTSKILTLAGSKMRVAELVVERMQQFKRVAPE
QLKHSADDSLPKFVANGDFPDESKEQNSPENDTHHLLSVEHDGALALALQQETKEEALAS
LEDAGLFFCQICQKDLSAMNTTRREQHVNRCLDEMEEAQMSSSSKPLVPECPICGKQFQT
PQSRVSHLKHCAVEMDVPPKMLLQAVHLQVSTLGEAPLQCPSNQPSRSKRKGSSVEASKK
TQKRAKMETKDEDLLVAMAMSRSLLEQEKQEQAKSVTNVKAVAALPIKWKPGSEKKRRKR
GPTAPPPLLLQDPEKARKRIEERVAMLLAEEVEFPPTPQLPTSRILENESGKATWLLPLS
KAKECFLWNISALTGPYDPESFYTAALTPPIVPWKPVQNHKPENLLPSVGSDQPKVSQQI
QPDLSSHEPTCTEVGGQTSDEFKSGSEGDGQFLSHSQKDAQTLQDLVELATEGLTLTQWN
LDVGHVQEMANQVQEAAQPGKEVTSSDIPHSGFVPPSKEKSLLTSSCKKASLRLLAEDFG
AMVNNPHLSDVQFQVDCGEVLYAHMFVLYARCPQVVQVVHSQGFLVEEDGNAQTRRVLLS
DVTAEAVSAFLRYLYAADADIPAGVLPQVGTLAARFGVRELMAKCESNTEESQLPSAADS
EDDLISVTGDKDCEDRAENFQDLLKSMWVGEDEEEVAMLNPECQKEDVVGEQELEEIYEF
AATQRKMVQGETEGSEGTDCSICSDTEAAQGTNQQTEEEEVKRSKSALISNSFKDMRDDN
EVEKSKCDLSAQEEKTQDINRCKRMNDLQTTFVPHHSEPQKWDIASHGATTNEGETVKRC
EGVKDNKSSQVSHDEADHCEKQLPSFHNDTNRNESYEHLFSQGTQGRYCEPSPLKEVIKE
LGKAPGEKHVDVGDSLLYSKSQKDLSPQRNSFCGSPAPKPYVPLFPAVGSSPASPKSERS
FASEHVSTPKQNRKEKSFPSDEIHFQKASELGAASRNKNIISPAKLPHVDLNKDTYVPVF
SSLVMRTQDAAVQENKEGDVIVLSSDDEMELQHDKKSPESGSALKKMEISGQLKCSNVEQ
GPEIPKAEHNSSVTDTEQRSTQVSCGITDTVHISSDVKMSTELSPRRQIDVCMESKQSPN
LSPEKRLSHEMSLGTDSSWLVPDTPVLSKSRSFSTQTQVTSINSLKSPGPKLGTKNFAAG
NNNHEMTGNLIKVHETTLSDKHLPMENSVSERSPPSSPTVGSFSMNCPPVSPEDPVLLSP
GHTNIKNKCAKISSLSKPLPLCHEQSLEDKTNTSVVEVEDTEKEISLPSLSSSVLLCGEP
PIPVDDSWHVEYLSPVRGNSQDSNRVSRAKTSTTSSPRAGSWQEQWESPAHVQEIKGSTP
LQGSHVGRRTTLFCLEKSPIEACSSVGNRPSYLNSKIWDDWNGEDEEDEFPEMLPLSQRL
SAAAGARQTDAVKTPEPSCQENDKSPSTPVTPMPAYSMMETPQLKKELSRFGVRALPKRQ
MVLKLKEIFQYTHQDVDSDFEDEIPSSQPPLQKSPAKHSRQPKADRAGGGKRASASRAVG
KRKQVATASSVLPVQGADDDLVGSHETGCAAPKEGTKMTHHPEGAEEQKRPSVSPERWSL
AADGEEPMLSASQESTVSSLDGSDISFGSQSSFMNGFEACAFQSEEEEEEFPASQAAAWE
EEKMEAVRCYIRSNTALYNRILFYEPIELADLHTELKQNGIKISKAKLLDFLDAHCITFT
TAGARKEKEKKKGKKRRRRRY
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgggtagagggaag
aaaaaagctggggatgctgaggtggcgaaaagggctcagaagaggccaaagagcactgca
gcaggaagcagattaagaagaggcaaagctcctgctaagagccaaaaccatcatcactta
ccagctgtgaaggagacatactttcctcaagatttgggaccaaaggaacaaagactggtg
cacaaagaagatggtgacgctgtggcctgtaatggtggtgagattgtacaagggaatgga
aagacaaaccctctctctgccagccagccaagtgcagtgatcagtgagtgcagccagagg
actctgtcagtaaatactctgcgtggctgttcccagactacgttatccttccatcctgct
acacagccagggacctgctcttcacccacctcaaagatactgacactcgcagggtcaaag
atgcgggtagcagagctggtagtggagagaatgcagcagttcaagagagtggcacctgag
cagctaaaacacagcgcagatgatagtttgccaaagtttgtagccaatggagatttccca
gacgaaagcaaggagcagaactcaccagagaatgatacccaccatcttctctccgtggaa
catgacggtgctctggctttggctcttcagcaggaaaccaaagaggaagccctggcaagc
ttggaagatgcaggcttgtttttttgtcagatctgccagaaggatctctcagccatgaac
acaacacgacgagagcagcatgttaacaggtgtctggatgagatggaagaagcacagatg
tcatcctccagcaaaccactggtccctgaatgtcccatctgcgggaagcagttccaaacc
ccacagagccgggtcagtcacctgaaacactgtgctgtcgagatggatgttccccctaag
atgctgcttcaggcagtgcatttgcaggtttccacccttggtgaggcacctcttcagtgt
cccagcaatcaaccaagcaggtcaaagcgaaaaggctcctccgtagaggcctcgaagaaa
acacagaagagggccaaaatggagactaaggatgaagatttgctggttgctatggcaatg
tcacgctctctgttggagcaagaaaagcaggaacaagcaaaatcagtgacaaacgtgaaa
gcagtggctgctttgccaatcaaatggaagccaggatcagagaaaaaacggcgtaaaaga
ggcccaactgcacctccaccattactgcttcaggacccggagaaggcccgcaaaaggatc
gaagagcgagtagctatgctgcttgcagaagaggtggaattccctcccacgcctcagctt
cccactagtaggattttggagaatgagtctgggaaagcaacctggcttttgccattgtcc
aaagccaaggagtgctttttgtggaatatcagtgctctgacaggaccttatgaccctgaa
tcattctatactgctgcattaacccctccaattgtaccttggaagcctgtgcagaatcat
aagcccgagaaccttttgccatcggtgggatctgatcagccaaaagtatcccagcaaatt
cagcctgacctcagttctcatgagcccacttgcacagaggttggaggccaaacttctgac
gaattcaagtcaggctctgaaggagatgggcagtttttatctcacagccagaaggatgct
cagaccctgcaggacctcgttgagttggccacggaaggacttacccttactcagtggaat
cttgatgttggccacgttcaggaaatggccaaccaggttcaggaagcggctcagccagga
aaagaagtgacttccagtgatattccacacagtggcttcgtgcccccatccaaagagaag
agccttctgacgagcagctgtaaaaaagcctccctcaggttgctggctgaagattttggt
gcaatggtcaacaacccccacttaagtgatgtccagttccaggtggactgtggggaagtc
ctttatgcccacatgtttgtgttgtacgcgcgatgtccacaggtcgtccaagttgttcac
agccaagggttcttagtggaggaggatgggaacgcccagacacgccgtgtgctgctgagt
gacgtgacagcagaggcagtgtctgcattcctgcggtacctttatgctgctgatgctgac
atccctgctggggtgctgccccaggtgggcactctggctgccaggtttggtgtgagggaa
ctgatggcaaagtgtgaaagcaacactgaagagagtcagctgccttctgcagcggattca
gaagatgatcttatctctgtgacgggtgacaaagattgtgaggacagagctgagaacttc
caagacctcttgaagtcgatgtgggtgggtgaagatgaggaagaagtagctatgctgaac
cctgaatgccagaaagaagatgtggtgggcgaacaggagctggaggaaatctacgagttt
gctgcaactcagagaaaaatggttcaaggtgaaacagaggggagcgagggaacagactgc
agcatctgcagtgatactgaggcagcccaaggtacaaaccagcaaactgaggaggaagag
gtaaagagatctaaatctgctttaataagcaacagcttcaaagatatgagggatgacaat
gaagtagaaaaatctaaatgtgacttgtctgcacaagaagagaaaacgcaggatataaat
aggtgcaagagaatgaatgatctacagaccacttttgtgcctcaccacagtgaacctcaa
aaatgggacatagcatcccatggtgccacaactaatgaaggagagactgttaagagatgt
gaaggtgtgaaggataacaagtcatctcaggtctcgcatgacgaggcagatcactgtgaa
aaacagttaccaagtttccacaacgatactaatagaaatgaaagttatgaacacttgttt
tctcagggaactcagggaaggtactgtgagccttctccattgaaagaagttatcaaagaa
ttagggaaggctcctggtgaaaaacatgttgatgtgggtgattcacttctgtacagcaag
tcacaaaaagatctctctccacagaggaacagtttttgtgggagtcctgctcccaaacct
tatgtgcccctttttcctgctgttggctcttcacctgcatctccaaaatcagagagaagt
tttgctagcgagcatgtgtcaacaccaaagcagaacagaaaggaaaagtcattcccatct
gatgaaatacactttcagaaagccagcgagctgggggctgcatcaagaaacaagaacata
atttctccagcaaagcttccccacgttgatttaaacaaggatacatatgtcccagtgttt
tcatcactggtcatgagaactcaggatgctgcagttcaggagaataaggagggtgatgtt
attgttttatcttctgatgatgaaatggagttacaacatgacaagaagtcgccagagtca
ggctctgctctaaagaaaatggagatctctgggcaactgaaatgttcaaatgtagaacaa
ggtcctgagataccaaaagctgaacataactcatcagtcactgacacagagcaaagatca
acccaggtctcatgtggcattacagatacagtgcatataagcagtgatgtaaagatgtcc
actgaattgtctcccaggaggcaaatagatgtttgtatggagagcaaacagagtccaaac
ctgagccctgaaaaaaggctcagtcatgaaatgtctttgggtacagacagctcctggcta
gtgccagacacaccggttctgagcaaaagcagaagcttctcaacacagactcaggtcaca
agtattaattctttaaagagtccaggacctaaactcggcacaaagaacttcgcagcaggt
aataataaccatgaaatgactggaaatttaataaaagttcatgaaacaacattgtcagac
aaacatttgcctatggagaactcagtgagtgaaaggagccctcccagcagcccaactgtg
ggatcattttccatgaactgccccccagtttctccagaggatccagttctgctctcccct
ggccacaccaacataaaaaacaaatgtgccaagatctcatctttatccaaacctttgcct
ctgtgccatgagcagtcattggaagataaaacaaataccagtgtggttgaggtagaggac
actgaaaaggagataagtctgccttctttgagcagcagtgtcttgctttgtggtgagccc
ccaatccccgttgatgactcctggcatgttgagtatctgtcgccagtcagaggtaacagc
caggactccaaccgggtcagccgtgcaaagaccagcaccaccagcagccccagagctggc
tcttggcaagagcagtgggagagcccagcgcacgtgcaggaaattaagggcagtacccct
cttcaaggaagtcatgttggcagaagaacaactttgttctgtcttgaaaagagtcctatt
gaggcatgttcatcagtgggcaatagaccaagttacttgaactccaaaatctgggatgac
tggaatggagaagatgaggaagatgaatttccagagatgcttcctctgtctcagaggttg
tcagctgcagcaggtgcccgtcagacagatgctgtaaagactcctgaaccttcctgtcag
gagaacgacaagtctcccagcactccagtgacaccaatgccagcttactccatgatggag
accccccagctgaagaaggagttgagcagatttggagttcgcgctctcccaaaacgccag
atggtgttgaagctgaaggagatattccagtatactcaccaggacgtggactctgacttt
gaggatgaaatcccatcttcccagcctcccctgcagaagtccccagccaaacattctagg
cagccaaaggcagaccgggcgggaggtggaaaacgtgccagtgcctcaagggctgtgggc
aaaaggaagcaggttgctacagcttcttcagtgctcccagtgcagggggctgatgatgac
cttgttggatcccatgaaacgggctgtgcagcacccaaggaggggactaaaatgacccat
cacccagaaggagctgaagagcagaaaaggccatctgtatctccagagagatggtctctg
gcagctgatggtgaggaaccaatgttatcagcatctcaggagtccacagtttcttcattg
gatggaagtgacatctcctttggttcacagagttctttcatgaatggatttgaagcctgt
gcttttcagtctgaggaggaggaagaggagtttccagcatctcaggcagcagcttgggaa
gaagaaaagatggaggcagtaaggtgctatatccgctcaaacacagccctgtacaacagg
attctcttttatgagccaattgagctggctgatctgcacacagagctcaaacagaacggc
attaaaatttccaaggcaaagctgctggactttttagatgctcactgtatcacatttacc
acggctggagcccggaaagagaaggaaaagaaaaagggtaaaaaaagacggaggagacga
tactga
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integrated database retrieval system
