Strigops habroptila (Kakapo): 115608266
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Entry
115608266 CDS
T08851
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115608266 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115608266 (EXOSC1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115608266 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
115608266 (EXOSC1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
115608266
NCBI-ProteinID:
XP_030342722
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Position
5:67442687..67444943
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AA seq
196 aa
AA seq
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MATPARYCVPGERLCSTEEATAGSGTYTRHGFIFSSLAGCLEKTSEESGLPIVSVVRDSD
PQLLPDVGAVVTCKVCSINSRFAKVHILYIGSTPLKSTFRGTIRKEDIRATEKDKVEVYK
SFRPGDIVLAKVQISLGDSQSNYLLSTAENELGVVAARSEAGMQMVPVSWCEMQCPRTHT
KEFRKVARVQPEFLQT
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcccgcacggtactgcgtacccggcgagcggctatgcagcacggaggaggcc
acggccggcagcgggacctacacccggcacggcttcatcttctcctcgctggctgggtgc
ctggagaagacgagcgaggagagcgggctgcccattgtgtccgtggtgagagacagtgat
ccccagctcctgcccgacgtgggggccgtggtgacatgcaaggtttgcagcattaactct
cgctttgctaaggtgcacatcctgtacattggctccacaccactgaaatccaccttccgg
ggcaccatacggaaagaagatattcgagccacagagaaagataaggtagaggtgtacaag
agtttccgccccggtgacatagtcctggccaaagtccagatctcgctgggggactcgcag
tccaactacctgctgagcacagcggagaatgagctgggtgtcgtggcggcacgcagcgag
gcagggatgcagatggtgcccgtcagctggtgcgagatgcagtgcccgcggacacacacc
aaggaattccgtaaggtggcccgtgtgcagcccgagttcctgcagacctag
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