Strigops habroptila (Kakapo): 115608569
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Entry
115608569 CDS
T08851
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04510
Focal adhesion
shab04512
ECM-receptor interaction
shab04518
Integrin signaling
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115608569 (COL6A3)
04518 Integrin signaling
115608569 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115608569 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115608569 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shab04147
]
115608569 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115608569 (COL6A3)
Exosome [BR:
shab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115608569 (COL6A3)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115608569 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
115608569 (COL6A3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
fn3
Ig_J
Fn3_Dep-1_3rd
Motif
Other DBs
NCBI-GeneID:
115608569
NCBI-ProteinID:
XP_030343415
LinkDB
All DBs
Position
5:complement(6652932..6714755)
Genome browser
AA seq
2811 aa
AA seq
DB search
MKKHRHLSFEAVFYLLLSGCCLVHAQQQAVIEVNKKDIVFLIDGSTALGSGPFNSIRDFV
AKIVQRLEVGPDLIQIAVAQYADTVKPEFYFNTHQSRKDVMANVKRMKLMGGTALNTGSA
LDFVRNNFFTSAAGCRMEEGVLPMLVLITGGKSMDAVDQAAAEMKRNRIVILAIGSRNAD
LAELQEIAHERDFVFNPNDFRVQFMQAILPEVLSPIRTLSGGLIIQEPPSVQVTKRDIIF
LLDGSLNVGNANFPFVRDFVATLVNYLDVGSDKMRVGLVQFSDTPKTEFFLYSYQTKSDI
IQRMGQLRPKGGSVLNTGSALNFVLSNHFTEAGGSRINEQVPQVLVLVTAGRSADPFLQV
SNELARAGVMTFAVGVRSADKAELEQIAFNPRMVYFMDDFSALTALPQELNKPITTYVSG
GVEEVPLAPTESKKDILFLIDGSANLLGSFPAVRDFVHKVISDLNVGPDATRVAVVQFSD
TIQVEFDFAELPSKQDMLLKVKRMKIKTGKQLNIGAALDEAIRRLFVKEAGSRIEEGVPQ
FLVLLAAGRSTDDVEQPSDALKQTGVVTFVIKAKNADPVELERIVYAPQFILNVDSLPRI
SELQPDIVNLLKTVQLQPTVVERGEKKDVVFLIDGSDGVRRGFPLLKTFVQRVVESLDIG
RDKVRVAVAQYSNVIQPEFLLDTHEDKADLISAIQELKVMGGSPLNTGAALDYLIKNVFT
VSSGSRIAEGVPQFLILLTADRSQDDVRRPSVVLKTSGTVPFGIGIGNADITELQTISFL
PDFAISVPDFSQLDTVQQVVSNRVIRLTKKEIESLAPDLVFTSPSPAGVKRDVVFMVDGS
RYAAQEFYLIRDLIERIVNNLDVGFDTTRISVVQFSEHPHVEFLLNAHSTKDEVQSAVRR
LRPQGGQQVNTGEALEFVAKTIFTRPSGSRIEEGVPQFLVILSSRKSDDDLEYPSQQVKQ
VGVAPMVVAKNVDPEEMVQISLSPDYVFQVSSFQELPSLEQKLLTPIETLTGDQIRRLLG
DVQPSVDISGDEKDIVFLIDTSDSVRPDGLAHIRDFISRIVQQLEVGPNKVRIGVVQFSN
NVFPEFYLKTHRSKNAVLQAIRRLRLRGGSPLNAGKALDYVVKNYFIKSAGSRIEDGVPQ
HLVVILGDRSQDDVNRPANVITSTSIKPLGVGARNVDRNQLQVITNDPERVLVVQDFPGL
PTLEKKVQSILEELPVPTTETPGFPGPGGKKQADIVFLLDGSINLGRDNFQEVLQFVYSV
VDAIYRDGDSIQVGLAQYNSDVTDEFFLKDYSTKPQILDAINKVIYKGGRVANTGAAIKH
IQANHFVKEAGSRIDQRVPQIAFIVTGGKSSDDGPSASLEITRKGVKVFAVGVKNIDLKE
VSRLASESATSFRASTAQELSELNEQVLVTLEAAMEEKLCPGTTDVTRDCDLDVILGFDV
SDVGPGQNIFNSQRGLESRVESVLNRITQMQRISCTGNQEPNVRVAIMAQARGGPVEGLD
FSEYQPELFERFQGMRTQGPYFLTADTLRSYLSKFRSSPSGSTKVIIHFTDGADDSIEEL
EATSSTLHEEGVNALIFVGLDRVSDFDRVMQLEFGRGFTYNRPLRVNLLDLDFELAEQLD
NIAERTCCKVPCKCSGQRGDRGVPGPIGPKGATGDLGYGGYPGDEGGPGERGPPGVNGTQ
GFQGCPGHRGTKGSRGFPGEKGELGEMGLDGIDGEEGDKGLPGSSGEKGYSGRRGDKGVK
GERGERGDRGLRGDPGDSGADNTQRGSRGQKGEIGPMGEPGPVGLDGQDGEVGRKGMAGR
RGPIGVKGTKGLPGQAGPAGEQGMRGPQGPPGQLGTPGIRGEQGVPGPRAGGGPPGTPGE
RGRIGPLGLKGEPGNPGPKGANGQQGPRGEMGDDGRDGIGGPGPKGRKGERGFIGYPGPK
GGPGDRGVAGGPGPKGNRGRRGNSGEPGTPGQKGEVGYPGPSGLKGDKGESRDQCALVRN
IKDKCPCCYGPKECPVFPTELAFAIDTSSGVVREVFNRMKQTVLRVVNNLTIAESNCPRG
ARVALVTYNNEVTTEIRFADARKKSSLLQQIQNFQATLTTKPRSLETAMSFVARNTFKRA
RSGFLMRKVAVFFSNGDTRASPQLNDAVLKLYDAGVMPVFLTSRQDPVLARALEINNTAV
GHAIVLPTSGSQLNETIQRLLTCHICLDVCDPDPTCGFGSQRPVFRDRRAAPTDVDTDIA
FIMDSSESTTPLQFSEMKKYISHLVSNLEISSEPKVSQHHARVAVLQQAPYEYETNSSFP
PVKTEFSLTDYGSKEKIINYLHNQMTQLHGTRAIGSAIEHTMAHIFESAPNPRDIKVIVL
MMTGKVNKQELEYLQKVVTGAKCKGYFFVVLGIGRKVDVKNIYSLASEPNDVFFKLVDKP
GELHEEPLLRFGRLLPSFIRSDFAFYLSPELRKQCEWLQNDQQAKSQSPGHTGQKAVYVA
PNATMGRTPSASSTTVSASIKPVASTNTRTRTTTASTTAQSRATDLTTASTVVQVNATTT
VVQASTTAHAKAAGRATANSTGAVSGGRRRQAKSHEIQITDVTENSARLRWASPEPHGAH
MFEISITSAHDHSLVQSQNLTGTEHIIRGLRSGQKYLVVITGYQKSQPKVTYTGTFSTKT
PAQPKVSVANMMLNTEPLEGPESHWPDPCLLDFDMGMQCKDYQIVWFFDYKNKICSQGWY
GGCGGNANRFEAEAECISKCLKPSAAEKTMQQPPLEKRLSSAMDICRLQKDEGTCRNFVL
KWYYDPATKSCARFWYGGCGGNDNRFNTQKECEKFCVPGNISPGVVTTIGT
NT seq
8436 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacaccgacatctgtcctttgaggcagtgttttatctcctactctcaggctgt
tgcttggttcatgcccagcagcaagcagttattgaagtgaacaagaaggatatagtcttc
ctgatagatggctcaactgctttggggtctggcccctttaactcaattcgtgatttcgtt
gccaaaattgtccaaaggctggaggttggacctgacctgatccaaatcgcggtggcacag
tatgcagacactgtgaagccagagttctattttaacacccaccagagcagaaaggatgtg
atggctaacgtgaagagaatgaagctcatgggtggtacggcactcaacactggctcggca
ctggactttgtgaggaacaacttcttcaccagtgctgctgggtgcaggatggaggaaggg
gtgctccccatgctggtgctcatcactggcggtaagtccatggatgctgttgaccaagcc
gcagcagagatgaaaaggaaccggatagtgatccttgccattgggtcaagaaatgctgac
ctggcagaacttcaagagattgcccatgagagagattttgtgttcaatccgaatgacttc
cgtgtacagttcatgcaagccattcttcctgaagtgctgtcgcctatcaggacactctct
ggaggactgattatccaagaaccgccatcagttcaagtaaccaaaagggatatcatcttt
cttttggatggatcactcaacgtcggaaatgccaacttcccctttgtgcgtgactttgtt
gccaccctagttaactaccttgatgtcggcagtgacaaaatgcgagttggcttagtgcaa
tttagtgacactcctaaaacagagttctttctatattcgtaccaaaccaaatcagacata
attcaacgtatggggcagctgaggcccaagggggggtcagtgctgaacactggctctgca
ctgaactttgtgctttcgaatcacttcacggaagctggtgggagcagaataaatgaacaa
gtgccgcaggtcctagtcctggtgacggcagggaggtctgctgatcccttcctgcaagtt
tccaatgaattagctcgggccggagtgatgacttttgctgttggagttaggagtgcggat
aaggcagaacttgaacagattgcctttaatccaagaatggtatattttatggatgatttc
agtgctctgacagctttaccccaggagttaaataagcctataacaacatatgttagtgga
ggtgtggaagaggttccactcgccccaacagaaagcaagaaagatattttattcctgatt
gatggctcagccaacctcttgggtagctttcctgctgtccgggactttgtacacaaagtc
atttctgacctgaacgtgggtcctgatgccacacgagtagctgtagttcagttcagtgac
accatccaagttgaatttgactttgctgaactcccatctaagcaagacatgcttctcaaa
gtgaaaaggatgaagataaaaactgggaagcaattgaacattggagctgcactggatgag
gctataagaaggctgtttgtgaaggaagctggaagcaggattgaggaaggagttcctcag
tttttggtcctccttgctgctggaagatcaaccgatgatgtggagcaaccgtcagatgct
ctgaagcaaactggagttgtgacctttgttatcaaagccaaaaacgctgaccccgtagag
ctggaaaggatcgtgtatgccccacagttcatcctgaacgtcgactccctccctcggatt
tcagagcttcagccagacatagtcaacctcttgaagactgtccagcttcagccaacagta
gttgagagaggtgagaagaaggatgtggtgtttctaatcgatggctcagatggtgtcaga
agaggtttccctctgctgaagacctttgtccaaagagttgttgaaagcctggatatcggt
cgtgacaaggtccgtgtcgctgttgcacagtacagcaatgtcatacaacctgagttctta
cttgacacccacgaagacaaagcagatctcatcagtgccatccaggagctgaaggttatg
ggaggctctcctctgaacactggagcagccctcgactatctcatcaagaatgtgttcact
gtgtcaagcggcagcaggatagcggaaggcgtcccacagttcctgatcctgctgactgct
gaccggtcccaggatgatgtaaggaggccctcagtggtgctgaagacaagtggcaccgtg
cccttcggcattgggattggaaatgctgacatcacagagctgcagaccatttccttcctc
ccagattttgctatttctgtgcccgacttcagccagctggatacagtgcagcaggtcgtc
tcgaacagagtcatccggctgaccaagaaagagatagagtcacttgcccctgatctggtt
tttacatcacccagcccagcgggtgtgaagagggacgtcgtgttcatggtggatggttcc
cgctatgctgcccaggagttctacctcatccgtgatctcattgaaaggatagtgaacaac
ctggatgtgggctttgacaccaccaggatttcggtggtccagttcagcgagcacccacat
gtggagttcctgctcaacgcgcactccaccaaggatgaggtgcagagtgctgtgaggagg
ctccggccgcagggtggccagcaggtgaacacgggggaggcccttgagtttgtggcaaag
accatcttcacccggccctccgggagccgcatagaggagggcgtccctcagtttctggtc
atcctctcctcccgcaagtccgacgatgacttagagtacccatcacagcaagtcaaacaa
gtgggggtggcacctatggtggtagcgaagaatgtggatcctgaggagatggtgcagatt
tctcttagtcctgattatgtattccaagtctccagcttccaggaactgcccagcctcgag
cagaagctgctgactcctattgaaaccctgactggagaccaaatcaggcggctgctggga
gatgtgcaaccctctgtagatatttctggtgatgaaaaggacatagttttcctcattgac
acctccgacagtgtcaggcccgatgggcttgctcacattcgggatttcatcagcagaatt
gttcagcagctggaagtggggccaaacaaagtgcgaattggtgtggtgcagttcagcaat
aacgtcttccctgagttctacctgaagacccacaggtccaaaaatgctgtcctgcaagcc
atccgccgcttgaggcttagaggggggtcccctctgaatgctggaaaagccctagactac
gtggtgaagaactacttcatcaagtctgcagggagcaggatagaagatggagtgccccag
cacctcgttgtcatccttggagaccggtcccaggatgacgtgaacaggcctgctaatgtg
atcacttcaacgagcattaaacctctgggtgttggagccaggaatgtggacaggaaccag
ctgcaggtcattaccaatgatcctgagcgcgtgcttgtggtacaggacttcccaggactc
ccaactttggaaaagaaggtgcagagtattcttgaagagcttccagtacctacaacagaa
acccctggatttccaggacctggaggaaaaaagcaagctgacattgtgtttttgctggat
ggctccatcaacctggggagagataacttccaagaagttctccagtttgtctactctgtg
gtggatgccatttatagggatggtgactctatccaggtaggactggcccagtacaattcg
gatgtcactgatgagtttttcctcaaggactactccaccaaacctcagattttagatgct
atcaacaaagtcatctacaaaggtggacgagtggcaaacaccggcgcagccatcaagcat
atccaggcaaatcactttgtgaaggaggccggcagcagaatcgaccagagagtgccccag
attgccttcattgtcacgggcgggaagtcctcagatgatgggccaagtgcctccttggaa
atcacacggaaaggtgtcaaggtgtttgcagttggtgtcaaaaacatcgacttgaaggaa
gtcagtaggctagccagtgagagcgccacgagcttcagagcatccacagcccaggagctg
tctgagctcaacgagcaggttctagttacgttggaagccgctatggaggagaaactgtgc
ccaggaacaacggacgttacaagagactgtgacttagatgtgatacttggcttcgatgtc
tcagatgttgggcctggccaaaatatattcaattcccagagaggtctggagtccagagtt
gagtctgtgctgaatagaataacgcagatgcagaggatcagctgcactggcaaccaggag
cccaatgtcagggtggccatcatggcccaggctcgtgggggacccgtggagggactggac
ttctctgagtaccagcctgaactctttgagaggtttcagggcatgcgaacccaggggccc
tacttcctcacagctgatacattgaggtcctacctgagcaagttcagatcctcgccctct
ggcagcaccaaggtcataatccattttactgatggtgcagatgactccatagaagagctg
gaggccacttcatctactttgcatgaagaaggtgtcaatgctctcatcttcgttgggctg
gaccgagtgagtgattttgacagagtgatgcagctggagttcggtcgtgggttcacctac
aacagacctctcagggttaatctgctggacctggatttcgagctggcggaacagctcgac
aacatcgcagagaggacttgctgcaaggtcccatgcaagtgctcagggcagagaggagac
agaggtgtgccaggtcccataggaccaaagggtgccacgggtgatcttggctacggaggc
tatcctggtgatgaaggaggaccgggcgagcgtggaccacctggtgtgaatgggacacag
ggtttccagggatgccccgggcacagaggaaccaagggttctcggggattcccaggagag
aagggtgaactgggagaaatgggtctggatggcattgatggagaagagggagacaagggt
ttgcctggctcctctggagagaagggatactctggaaggaggggtgataagggagttaaa
ggcgaacgaggagaacgaggtgaccgtgggctccgtggagacccgggagattcaggagct
gataatactcaacggggatccagaggccaaaagggtgaaattggaccaatgggagagcca
ggaccggtggggctagatggccaagacggtgaagtcggaaggaagggtatggcaggacga
aggggaccgataggagtgaagggtaccaagggcttgcccggtcaagcggggccagctgga
gaacaaggcatgagagggccacagggtccgcctggccagcttggcacaccaggcatcaga
ggagaacagggtgttcctggacccagggccggtggtggaccaccaggaaccccaggagag
cggggcaggatcggtcccctgggactaaagggtgagcctggaaaccctggtcccaaaggg
gcaaatggacagcaaggcccacgaggagagatgggtgatgatggacgagatggaattggt
ggcccaggtcctaaaggcagaaagggagaacgcggcttcatcggctacccggggcccaag
ggtggacctggtgaccgtggcgttgctggaggccccggccctaaaggaaacagaggccgc
agaggaaattcaggagaacctgggacacctggtcagaaaggagaggttggataccctgga
ccatctggacttaagggcgataaaggagaatccagagatcaatgtgcacttgtgcggaac
atcaaagacaaatgcccttgctgctatggtcccaaggagtgccctgtcttcccaactgag
ctggcctttgctattgacacctcctcgggtgttgtgagggaagttttcaacaggatgaag
caaaccgtgctcagagtggtcaacaacctaaccatcgctgaaagcaactgtcctcggggt
gcccgggtggctctggtcacctataacaatgaggtcaccacggagatccgctttgctgat
gccaggaagaaatcaagcctcctccagcagatccaaaacttccaggctaccctgaccacg
aagccacgcagcctggagactgccatgtcctttgtggccaggaataccttcaagcgtgcc
cgaagcggctttctcatgaggaaggtggctgtctttttcagcaacggggacacaagagcc
tccccgcagctcaacgatgctgtgctcaaactctacgatgctggagtcatgccagtgttc
ctaaccagcagacaggacccggttctcgccagagctctggagatcaacaacacagcggtt
ggacatgcaattgttcttccaaccagcggcagtcagctgaatgaaactatccagaggctc
ttgacttgtcacatttgtctggatgtatgtgaccctgatcccacctgtggttttggtagt
cagagacctgtattcagagacagaagggcagctccaacagatgtagacactgacatagcc
ttcatcatggatagctcagaatccaccacccctctgcagttcagtgagatgaagaagtac
atttctcacctcgtaagtaacttggaaatcagctctgagccaaaagtatctcagcaccat
gcaagagtggcagttctccagcaagctccttatgaatatgaaaccaactcaagcttccca
ccagtaaaaactgagttttcgctaactgattatgggtccaaagagaagatcattaattac
ctgcacaaccaaatgacccagctccatggcacgagggctataggaagtgcgattgaacac
acaatggctcatatttttgaaagtgcaccaaaccctcgggatataaaagtcatagttctg
atgatgaccggaaaagtgaataaacaagaacttgagtacctgcagaaggttgttactggt
gcaaaatgcaaagggtacttctttgttgtcttgggcattggcaggaaagtggatgtcaag
aacatctatagcctagctagtgagccaaatgatgtgttcttcaaattggtcgataaacca
ggagagcttcatgaagagcccttactacgctttgggagactgctgccgtcttttatcaga
agcgactttgctttctacctgtctccagagctaaggaaacagtgtgagtggctccagaat
gaccagcaagccaagagccagagccccgggcacactgggcagaaagcagtgtacgtggca
cccaatgcgaccatgggccggacccccagtgccagcagcaccacagtcagtgcgagcatc
aagcctgttgcaagcaccaacacccgcaccagaaccaccactgccagcaccacagctcag
agcagagccactgacctgaccaccgccagcaccgtagtccaggtgaatgccaccaccacg
gtggtccaggcaagcaccaccgcccatgccaaagccgccggccgcgccactgccaactcc
acaggtgccgtgtcaggaggcaggagaagacaagcaaagagccacgagatccaaatcaca
gatgtcactgagaacagtgccaggctgcgctgggccagccccgagccacatggtgcccac
atgtttgagatctccatcacctctgcgcatgaccactctcttgtgcagagtcaaaacctg
acgggcactgagcatatcatccgcggactcaggagtggacagaaataccttgtcgtcatt
actggctaccagaaatcccaacccaaagtgacgtacacagggacgttcagcacaaagacc
ccagcgcagcccaaggtgtccgtggccaacatgatgctcaacacagagccactggaaggg
cctgagagtcattggccagacccttgcttgctggactttgacatgggcatgcagtgcaag
gactatcagattgtgtggttctttgactacaaaaacaagatctgcagccagggttggtat
ggtggctgtggtggtaatgcaaatagatttgaggccgaagctgagtgcattagcaaatgc
ttaaaaccatcagcagctgagaaaaccatgcagcagccacctcttgagaaaagattatca
tcagccatggacatctgtcggctgcagaaagacgaggggacctgcaggaactttgtgctc
aagtggtactatgaccccgcgaccaagagctgtgcccggttctggtacggcggctgcggc
ggcaacgacaacagattcaacacgcagaaagaatgtgaaaagttctgtgtccctggtaac
atcagccctggtgtggtgacgacgataggaacatag
DBGET
integrated database retrieval system
