Strigops habroptila (Kakapo): 115608692
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Entry
115608692 CDS
T08851
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shab04147
]
115608692 (COL18A1)
00535 Proteoglycans [BR:
shab00535
]
115608692 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115608692 (COL18A1)
Exosome [BR:
shab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115608692 (COL18A1)
Proteoglycans [BR:
shab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115608692 (COL18A1)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115608692 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115608692
NCBI-ProteinID:
XP_030343769
LinkDB
All DBs
Position
5:complement(4616700..4655880)
Genome browser
AA seq
1569 aa
AA seq
DB search
MASLCLGFLLLLACCFSSSSQTNPLDWIWSTAAPGEGMAEPEPLASAAAPTPSASLRMWG
DQLEWDVTAPQHREPEPGTAALIGEGTAAKNTGNATGLVESTTQAQASVAPPHSMSPTPG
QDAASNSTEDLGITEDLQLFGMGSTEDPQLFGMGSAQDPQLFGMGSTEDLKLLGMGSTED
PQLFGMGTTKDPQRFGMGSTEDPQLFGMGSTEDRQLFGMESTEDLQLLGTGNTAVPGTQV
SLQRPAGPHPENLSAEVSLLELIGDPPPEEILKINGPDNNPGYVFGPNANTGQVARYHLP
SPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGKQHIIFYYTEPGSP
RSYAAANFTVPTLLNQWTRFAISVEEDEVILYLDCEEHERVRFERSPDEMELEDGSGLFV
AQAGGADPDKYQGVIADLKLQGDPRAAERQCEEEEDDAEEVSGDFGSGAEGGHQPLGKVR
GVPGLMDAIPVTSPPVVAGSGGSLQLAERTRAEGMLQVSRGGTGPRGDKGKKDELGLKGD
VGTSSIVGLGSVKGEKGEKGELGVKGSAGFGYPGSKGQKGEPGNPGPPGTLSQHTDSLVV
EQVTGPPGPPGKDGAPGRDGEPGDPGEDGKPGDMGPQGFPGTPGEPGLKGEKGEPGMGPR
GPPGPPGPPGPPGPSFKHDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGEP
GRFGMNHTDLPGPPGLPGRDGIPGPPGPVGPPGRDGTDGQPGPKGERGDMGDLGLPGVPG
PKGSKGETGPAGAPGETGLAGLPGPMGPRGPPGPPGPPGPPGPGYEAGFSDMEGSGLMFA
SGSPGPRGPEGPQGVPGLPGVKGEVGSPGQPGLPGPKGDAGVPGVDGRPGLEGFPGPQGP
KGDRGSPGDKGERGQDGVGLPGPPGPPGPPGQVIAVSSEDKSLTAFPGPEGRQGHAGFPG
PVGPKGDRGASGPQGSPGLKGEKGEPGVIISPDGAVVTAKVKGEKGEPGLRGPVGPSGPQ
GRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVSGMMGLRGPPGPPGPPGPPGPPGSIVY
DSSNAFSDSRHPVLPAFPGFHQFPGQKGEKGDTGPPGPPGHFPYDSSHFGANLRGDKGDA
GPKGEKGEPGSTPIYSPSLSGLPGPPGPQGYPGLPGPKGDSIVGLPGPPGPQGPPGIGYE
GRQGPPGPPGPPGPPSFPGPHRQAISIPGPPGPPGPPGPPGSSGMSLGLHTLPTYQAMLS
TAQDLPEGSLIFLSDRQELYVRLRGGIRRVLLEEHTLMLSSALDNEVYNKLPSTHYSGPQ
PALQPRDPLHPLRNHGPPPTARPWRGDEVVANQHRLPEQPLLHHQHELLNSYYIHRRPDP
APVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQ
DLYSIVRRADRATVPIVNLRDEVLFSNWEALFTGSGAPLRAGSRILSFDGRDVLRDAGWP
QKSVWHGSDAKGRRLPESYCETWRTEENTATGQASSLGSGKLLEQEASSCQHTFIVLCIE
NSFMTAAKK
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atggcctcactttgcttggggtttctgctcctcctggcttgctgcttctcctcctcttcc
caaacgaaccccctggactggatttggagtacggcagcaccgggtgagggaatggcagaa
ccagagccgctcgcctctgcggctgctcctactcccagcgcatccctgaggatgtggggt
gatcagctggagtgggatgtcaccgccccacagcaccgggagccggagccgggcacagca
gcactcattggtgaggggaccgcagccaaaaacactgggaatgccacagggctggtggag
agcaccacacaggcacaggcaagcgtcgctcctccccacagcatgtcacccacacccggg
caggatgcggccagcaactccactgaggacctgggtatcactgaggacctgcagctgttt
gggatggggagcaccgaggacccgcagctctttgggatggggagcgctcaggacccgcag
ctgtttgggatggggagcaccgaggacctgaagctcctggggatggggagcactgaggac
ccgcagctctttgggatggggaccaccaaggacccacagcgcttcgggatggggagcacc
gaggacccacagctctttgggatggggagcaccgaggaccggcagctctttgggatggag
agcaccgaggacctgcagctcctggggacagggaacactgcagtgccagggacacaggtg
tccttgcagagaccagcgggtccccatccagagaacctgagtgctgaggttagcctcctg
gagctgattggagaccccccaccagaggagatcctcaagatcaatggtcctgacaacaac
cctggctatgtattcggccccaatgccaacacaggccaagtggcccggtaccaccttccg
agccctttctaccgggacttctcgctcctgttccacatccaacccaccaccccgagggct
ggagtgctctttgccgtcacggactcctcgcagagcatcatctatgtgggtgtcaagctg
tcggagctgcgggcgggcaagcagcacatcatcttctactacacagagccgggctcgccg
cgctcgtacgcagcagccaacttcactgtgcccaccttgctcaaccagtggacgcgcttt
gccatcagcgtggaggaggatgaagttatcctctacctggactgtgaggagcacgagcgg
gtccgctttgagcgctccccggatgagatggagctggaagatggctctgggctctttgtt
gctcaagccggaggggccgatccggataaataccagggggtcattgctgatctgaagcta
caaggggacccgcgggcagccgagcggcagtgcgaggaggaagaggatgatgctgaggag
gtctccggtgacttcggcagtggggcagaaggtggacaccaacccttggggaaagtcagg
ggtgtcccagggctgatggacgccatccctgtcacctctccccctgttgtggcgggcagt
gggggctccctgcagctagccgagaggaccagagcagagggaatgctgcaggtctccagg
ggaggcactggccccagaggtgacaaggggaagaaggacgaactcggcctgaaaggggat
gtgggaaccagcagtatcgtggggttgggcagtgtcaagggcgaaaagggggagaaagga
gagctgggtgttaagggcagcgctggctttggctaccctggctccaagggccagaaaggg
gaaccagggaaccctggtccccctgggaccctgtcccagcacactgacagcttggtggtg
gagcaggtcactggtcccccagggccaccagggaaggatggagcccccggcagggatgga
gagcctggagatcccggcgaggacggcaaaccaggtgatatggggccccaggggttcccc
gggacgccgggggagcctggtctgaagggggagaagggtgagccaggcatggggccgagg
ggaccacctggaccaccaggccccccaggaccaccgggaccctccttcaagcatgacaag
ctgaccttcatcgacatggagggctctggcttcggtggtgacctggagagcctgcggggg
ccgcgagggccgcctggccccccggggccacccggcgttcccggtttgccaggggagcca
ggacggttcgggatgaaccacacggacctgccgggacctccaggattgccaggcagggat
gggatccccggacccccggggccagtgggtcctcctggaagagacgggacagatgggcag
ccagggcccaaaggagagcggggcgatatgggtgacctcggcctccccggtgtaccagga
cccaagggcagcaagggagaaacgggaccagcaggagccccaggagaaacaggcttagct
ggtctacccgggcccatgggaccccgtgggccaccaggaccccctggccccccaggacca
ccagggccaggctacgaggctggatttagtgacatggagggctcagggctgatgtttgcc
agtggctcccctggaccacgtggacccgaaggaccacagggggtgccgggactgccaggg
gtgaagggggaggttggcagccccgggcagcctggtttgccgggaccaaagggagatgct
ggtgttcctggtgtggatggccgccctggcctggagggcttccctggaccacagggaccc
aaaggtgacagaggcagccctggcgacaagggcgagcgaggccaagatggtgtggggctg
cctggtccccctggcccccctggtccccctgggcaggtcattgctgtctcaagtgaagat
aagtctttgacggcttttcctggtccagagggcagacagggtcatgctggctttccgggc
ccggtgggaccgaaaggagacaggggtgcatctggtccccagggctctccggggttgaag
ggggagaagggggagcccggtgtcatcatcagccccgatggggctgtggtcactgcaaag
gtgaaaggagaaaagggggagccggggctacgaggaccagtaggaccctccggtccccag
ggacgagcagggatgaagggagagatcggcttcccgggcagacccggacgtcccggcatg
aacgggctgaagggtgagaagggggaccccgcggatgtcagtggcatgatgggcttgagg
ggtcccccaggacccccaggtcccccggggccccccgggccacctggcagcatagtgtac
gacagcagcaatgccttcagtgactccaggcatcccgtgctgccagccttccctggtttc
caccagtttccaggacaaaagggagagaagggtgataccggacccccgggacccccaggc
cacttcccctatgactcaagtcactttggtgccaacctgcggggtgacaagggggacgca
ggtcccaagggtgagaagggcgagccgggcagcacccccatctacagccccagcctctcc
gggctgccggggcccccagggccccagggctaccccgggctgccgggtcccaaaggggac
agcatcgttggcctgccagggcctcctggacctcagggtccccctggaatcggctatgag
gggcggcagggcccccctggccctcctggcccccctggtccaccctccttcccaggtcct
catagacaagctatcagcatccctggacctcctggaccaccgggaccccctggaccacca
ggcagtagcgggatgtccttagggcttcacaccctgccaacgtaccaggcgatgctgagc
accgcgcaggacctgcccgagggcagcctcatcttcctcagtgaccggcaggagctctac
gtgcgcctgcgcggcggcatccgccgcgtcctgctggaggagcacaccctgatgctcagt
tcggctctggacaacgaggtgtacaacaagctgcccagcacccactacagcggccctcag
cctgctctgcagccccgtgaccccctgcaccccctccgcaaccatggcccccctcctacc
gcacgaccctggcgtggggacgaggtggtggccaaccagcaccgcctgcccgagcagccc
ctgctccaccaccagcacgagctcctcaacagctactacatccatcgccgcccggatcca
gcccctgtggctgcccatgtgcaccaggacttccagcctgctcttcacctggtggccctg
aacacgccactaagcggtggcatgcgtggcatccggggggctgatttccagtgcttccag
caagcccggcaggtcgggctggccggcaccttccgtgccttcctgtcctcccgcctgcag
gacctctacagcatcgtgcgcagggctgaccgtgccactgtgcccattgtcaacctccgg
gacgaagtgctcttcagtaactgggaagcccttttcacgggtagtggggctccgctgcga
gccggttcccgcatcctctccttcgatggccgggatgtcctgagggatgcaggatggccc
cagaagagtgtctggcatggctcagatgccaagggccggcgcttgcccgagagctactgc
gagacatggaggacggaggagaacacagccactggccaagcctcctccctgggctccggc
aagctgctggagcaggaggccagcagctgccaacacaccttcattgtgctctgcatcgag
aacagcttcatgaccgctgccaaaaagtga
DBGET
integrated database retrieval system
