Strigops habroptila (Kakapo): 115609301
Help
Entry
115609301 CDS
T08851
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115609301 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shab04121
]
115609301 (TRIM54)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115609301 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
TRIM_CC
Sina_RING
RHH_9
CYP38_PsbQ-like
Prok-RING_4
Zn_ribbon_FGT1_2
CoiA_N
ARM_KNTC1_3rd
CagA
Motif
Other DBs
NCBI-GeneID:
115609301
NCBI-ProteinID:
XP_030345174
LinkDB
All DBs
Position
6:63292170..63296232
Genome browser
AA seq
380 aa
AA seq
DB search
MNFAVGLKPLLAEARNMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELSDGIAM
LVAGNDRIQAIITQMEEICRTIEENGRRQKQHLGLRFDSLYSILEERKKELLQSIAREQE
AKVQLVRGLIRQYGDHLEASSKLVESAIQAMEEPQMAVYLQHSKELLKKITDMSKVSMSS
RPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEEEVDGLGDGSEAAADEDRLESLEAP
DAAEDVGPRQKPASSPHGQH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggaacatggagagcctg
gagaagcagcttatctgccccatctgcctggagatgttcaccaagcccgtggtgatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctctaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcggccggttccggtgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcggccaggcccctgcatgccaaggcc
gagcagcacctcatgtgcgaggagcacgaggacgagcgtatcaacatctactgcctgcgc
tgtgaggcaccaacctgctccctctgcaaggtcttcggggcacataaggactgcgaggtt
gcaccgctgcccgctgtctaccagcgccagaagagcgagcttagcgatggcattgccatg
ctggtggcggggaatgaccgcatccaggccatcatcacacagatggaggagatctgccgc
accatcgaggagaatggccggcggcagaagcagcacctggggctgcgctttgactcactg
tacagcatcctggaggagcggaagaaggagctgctgcagagcatcgcacgggaacaagag
gcgaaggtgcagcttgtgcggggcctcatccgccagtacggtgaccacctggaggcctcc
tccaagctggtggagtcagccatccaggccatggaggagccccagatggccgtgtacctg
cagcactccaaggagctcctgaaaaagatcacagacatgtccaaggtgtcaatgagcagc
cgcccagagcccggctatgagaacatggaccacttctccatcaatgtggactatgtggcg
gagatgctgaggaccatcgagttccagacagagccactgggcgaggaagaggtggatgga
cttggggatggcagtgaggctgcggcagatgaggaccggctggagagcctggaggcacct
gatgctgcggaggatgtggggccgaggcagaagccagcgagctctccccatggtcagcac
tga
DBGET
integrated database retrieval system
