Strigops habroptila (Kakapo): 115609340
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Entry
115609340 CDS
T08851
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115609340 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115609340 (HBS1L)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115609340 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GIP1_N
Motif
Other DBs
NCBI-GeneID:
115609340
NCBI-ProteinID:
XP_030345273
UniProt:
A0A672UI67
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All DBs
Position
6:3559876..3615824
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AA seq
686 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
YEGTDDTADYFTSSHQLTEVDRARLNSCLDQMREVLAESVPEQTMVQAVLDSKFDVQKAL
DLVLSQGSKQNVKTKNEDAVIVGKKTKGKTRDSQSARMESEIVPKITKMTVSGKKQSMGF
EVPCVIAEENGHANTPQKGLSTEDASVTSGVPEAVSKSALSQAVQVSEEQNTVPTPVKKS
GKTKPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQE
SKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITG
AAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERF
QEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQISDLTQWYKGKCLLEQIDSFK
PPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGYIQVGERLLAMPPNETCTAKGITLHD
EPVDWAAAGDHVTLTLTGMDIIKINVGCVYCDPKEPIKVCTRFRARVIIFNIEVPITKGF
PVLLHYQTVSEPATIRRLLSVLHKSTGEVTKSKPKFLSKGQNALIELQTQRPIALELYKD
FKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgtccgaggctataactacgacgaagattttgaagatgatgat
gtgtatggccaatcagtagaagatgattattgcatttctccttcaacagcagctcagttt
atctactccagacgagacaaaccagcaacatttgctgagccattagaagaagaatatggc
tatgaaggtacagatgatactgctgattattttacatccagtcatcagttgactgaagtt
gatagagcccgtcttaattcatgccttgatcaaatgagagaagttttggcagagtctgta
ccagagcagacaatggtgcaagcagtgctggatagtaaatttgatgtacagaaggctttg
gatcttgtgctttcacaaggcagtaagcaaaatgtgaagaccaagaatgaggacgctgtg
attgtaggaaagaagacaaaaggaaaaacaagggattcccagtcagccagaatggaatct
gaaattgtgccaaaaattaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgtgattgctgaagaaaatggccatgctaatacacctcagaaaggactg
tcaactgaagatgccagtgtaacttctggggtacctgaggcagtctcaaaatctgctctt
tcacaagcagtgcaggtttcagaagagcagaatacggtgcctactccagtaaaaaagtca
ggcaagacaaaaccacaaatagatgtgaaagcagagttggagaagagacaaggaggaaag
caactgcttaatttggtggtaataggacatgttgatgcaggtaaaagtactttaatgggt
catctgctctaccttttgggaaatgtgaataaaagaactatgcacaaatacgaacaagag
tctaagaaggctggcaaagcttcgtttgcctatgcatgggtcttggatgaaacgggtgaa
gaaagagaaaggggagtgacaatggatgtgggtatgaccaaatttgagacaaagactaaa
gtaattacactgatggatgctccaggccacaaagacttcattccaaatatgatcacagga
gctgcacaggctgatgtggctattttggttgtggatgctagcagaggagagtttgaagca
gggtttgagacgggaggacaaactcgagaacatggattattagtgcgctctcttggagtg
acacagctagctgttgcagtcaataaaatggaccaggtcaattggcaacaggaaagattt
caggaaattacgagtaaacttggccaatttcttaaacaagctggctttaaggaatcagat
gtggcttatatcccaacaagtggccttggtggtgaaaatctggttacaaggggtcagata
agtgacctcacacaatggtataaaggaaagtgtttgttagagcaaatcgattctttcaag
ccaccgcaaagatcagtggataaaccatttaggttgtgtgttgctgatgtttttaaagac
caaggatcaggattttgtgtgactggtaaaatagaagcaggctatattcaagttggagaa
cgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcatgat
gaaccagttgattgggctgcagcaggagatcacgttactctcactttgaccggcatggat
atcatcaaaatcaatgttggctgtgtatattgtgatcccaaggaacccattaaagtttgc
actcgtttcagagctcgggttattatcttcaatattgaggttccgatcactaaaggattt
cctgtgcttttacactatcaaactgtaagtgaacctgctactattagaagactgttgagt
gttctgcacaaaagcactggtgaagtgacaaagagtaaacctaagttcttgtctaaagga
cagaatgctctaatagaactgcagactcaaagacctattgccctagagttgtataaggat
tttaaagagcttgggaggtttatgttacgctacagtggttccactattgctgcaggagtt
gtcacagagattaaagaatga
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