Strigops habroptila (Kakapo): 115609396
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Entry
115609396 CDS
T08851
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115609396 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115609396 (CPSF3)
03019 Messenger RNA biogenesis [BR:
shab03019
]
115609396 (CPSF3)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115609396 (CPSF3)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115609396 (CPSF3)
U7-dependent histone pre-mRNA processing factors
115609396 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
115609396
NCBI-ProteinID:
XP_030345417
UniProt:
A0A672U019
LinkDB
All DBs
Position
6:47196249..47215560
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AA seq
691 aa
AA seq
DB search
MSAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVHKISKKVDMDVYRKRMEIMLQDMFGEDCVSSKDGSVLCITVDGKTANISLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaagcggaaagcggaggcgctgatcccggcggaggagagcgatcagttgctc
atccggcccctaggtgctggccaagaagtaggaaggtcatgcattattctggagtttaaa
ggaagaaaaataatgcttgactgtggaatccatcctggactggaaggaatggatgctctt
ccttacattgatttgatagatcccgctgagattgatctcctcctaattagccatttccat
ttagatcactgtggggctttaccatggtttttacagaaaacaagttttaaaggaaggaca
tttatgactcatgccacaaaagctatttacagatggcttctctcagactatgtcaaagtc
agtaatatatcagcggatgacatgctatatacagaaacagaccttgaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaagaggtggcaggaatcaaattctggtgt
taccacgcaggccacgtcctgggagcagccatgtttatgattgaaatagcgggtgtgaag
cttttatatacaggtgatttctcaagacaggaggacagacatctgatggcagctgagatt
cccaatattaaacctgatattcttataattgaatccacgtatggtactcacattcatgaa
aaaagggaagagcgagaggcaagattctgtaacactgttcatgacattgtcaatagagga
ggtagaggtcttattcctgtgtttgccctgggtcgagctcaagaactacttttaatttta
gatgaatactggcagaatcaccctgaactccatgatatccctatatactatgcctcctcc
ttggcaaagaaatgtatggcagtttatcagacatatgtcaatgccatgaatgacaagatc
cgcaagcaaattaacatcaacaatccatttgttttcaagcatattagtaatctgaagagt
atggatcattttgatgatattggcccaagcgttgtgatggcatccccaggtatgatgcag
agtggcttatccagagagttgtttgaaagctggtgcacagataagagaaatggagtaatt
atagcagggtactgtgttgaaggaacactcgctaagcacatcatgtctgaacctgaagag
atcacaacaatgtcagggcaaaagctcccactgaagatgtctgtggactacatttctttc
tctgctcacacagattatcaacaaaccagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggtgagcagaatgaaatggccagattgaaagcagcactgatccgg
gaatatgaggataatgatgaagttcacatagaagttcataatcctaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatcctagttaaaagaaattttaactatcac
atcctttctccatgtgacctctccaattacacagacttggcgatgagcactgtaacgcag
acacaagccattccatacacaggcccttttaatctactttattatcagctacaaaaactt
accggtgacgtagaagaaatagaaatccaacaaaaaccagccctgaaggttttcaaaaat
attactgtgatccaggagccgggcatggtagtccttgagtgggtggccaatcctgctaat
gatatgtatgcagacaccgtgacaacagtgatactggaagtgcagtcaaatcccaaaata
cagaaagctgcagtacataaaatttcaaagaaagtagacatggatgtgtataggaagaga
atggagatcatgcttcaggatatgtttggagaagactgtgtgagttcaaaagatggctct
gtcctgtgcatcaccgttgatggcaagactgcaaacatttcactggacactcggacagtt
gactgtgagccaggaagtgaagatgatgaatccctccgtgaaatggtggaactggctgca
cagaggctttatgatgccctcagcccagtatactga
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