Strigops habroptila (Kakapo): 115609521
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Entry
115609521 CDS
T08851
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shab03041
]
115609521 (DDX1)
03016 Transfer RNA biogenesis [BR:
shab03016
]
115609521 (DDX1)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115609521 (DDX1)
Spliceosome [BR:
shab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115609521 (DDX1)
Transfer RNA biogenesis [BR:
shab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115609521 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
115609521
NCBI-ProteinID:
XP_030345726
UniProt:
A0A672UAX7
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Position
6:50311848..50333437
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AA seq
740 aa
AA seq
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MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCFLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGNVVKSQHSGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggctttttcggagatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttcttcctacggatatccaggcagaatccatcccactgatcttgggaggtggt
gatgtacttatggctgctgaaacagggagtggaaaaactggtgcttttagcattccagtt
atccagattgtttatgaaacactgaaggaccagatggaaggcaagaaagggaaagcaact
attaaaaccggtggggcagtgctcaataaatggcaaatgaacccatatgatagaggatca
gcttttgcgatcggatcagatggtctgtgttgtcaaagcagagaggtaaaagaatggcat
ggatgcagagcaactagaggtgtgactaaagggaagtactactatgaggtttcctgtcat
gaccaaggcttgtgcagagttggctggtcaactatgcaggcttcacttgatttgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacaattggatgttttctagacatagataaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
catataaggaaccaagcactttttgcagcctgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatattggtctctgcaaa
gctccagatggtaatgttgtaaagtcacaacactcaggaaatgcacaggtggttcaaaca
cagaaccttccaaatgctccaaaagcattgattgtagaaccatcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgttgattattggtggggttgctgcaagagatcaactctctgtgctggaacaaggagtg
gatattgtcgttggaactcctggaagactagatgacttggtctcaacgggaaagcttaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcagataacttcagatggaaagaga
cttcaggtgattgtgtgctctgccacactacattcttttgatgtgaaaaaactatctgaa
aaaattatgcattttcccacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccacgtagttgtgcctgtaaatccaaaatctgacaaactctgggaaagacttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacccggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
attaaagaacacaagatggaccaagccattattttctgcaggactaaaatagattgtgat
aatatggagcagtactttatccaacagggtggaggccctgataggaagggacatcagttc
tcatgtgtctgtctgcatggtgacagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccgtatgttatcaacgtcacactccctgatgaaaaacagaactatgtt
catcgaattgggagagtaggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttataat
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttgaactgcactattgcccaagttgaaccagacataaaagtacca
gtagatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatattctggcacccacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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