Strigops habroptila (Kakapo): 115609769
Help
Entry
115609769 CDS
T08851
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04510
Focal adhesion
shab04512
ECM-receptor interaction
shab04518
Integrin signaling
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115609769 (COL9A1)
04518 Integrin signaling
115609769 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115609769 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115609769 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
shab00535
]
115609769 (COL9A1)
Proteoglycans [BR:
shab00535
]
Extracellular matrix (ECM) proteoglycans
Others
115609769 (COL9A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115609769
NCBI-ProteinID:
XP_030346269
LinkDB
All DBs
Position
6:32717607..32791005
Genome browser
AA seq
921 aa
AA seq
DB search
MKMKSNWKITAFFYVCSFLWSLISATIQHQSRLPAILGANQRTDLCPTIRIGQDDLPGFD
LISQFQIEKAASQGIIQRVVGSTSLQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFR
MTGATLQKYWTIWQIQDSSGKEQVGVNLNGQMKSVEFSYKAADGSLQTASFLHLPFLFDS
QWHKLMISVEANSVTLFIDCIKIESLNIKPKAKISIDGFAVIGKLKNNPQISVPFEIQWM
VIHCDPLRPQREGCGELPARISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGP
PGPPGLEGDAGKPGSPGLPGEPGADGFTGPDGSRGATGPKGQKGEPGLPGARGLPGKGLL
GPPGPAGAAGLPGEVGRAGPPGDPGKRGPPGLPGPPGPRGTIGLQDGDLLCPNACPPGRP
GHAGLMGMKGQKGSKGESGEPGRQGYKGEEGDQGPSGEVGAQGPPGIIGIRGITGIMGPK
GTKGARGLDGEPGPQGLPGAPGDQGQRGSLGEAGPKGERGPQGTRGINGLPGPKGESGLS
GVDGREGIPGMPGAKGEPGKPGAPGDAGLQGLPGLPGSPGVKGIPGPKGNTGRPGVSGLM
GSSGKPGEQGPEGEVGPTGPRGPAGSRGEPGPAGPPGIPGKWGPQGDIGLPGLPGPPGLP
GGKGDRGSVGEPGPKGEQGAPGAQGDGGEKGDLGDMGLPGAKGAVGNPGDPGSRGPEGSR
GLPGMEGPRGSPGPRGLQGEQGAPGLPGSQGPAGKEPTDQHIKQVCMRVMQEQLAQLAAS
LRRPEFGAPGLPGRPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGEPGER
GERGFPGRGPKGYPGPRGLPGEPGKPSYGSDGRDGERGPPGVAGQPGVPGPPGPPGPPGY
CEPSACRMEAGQRADKNMKGP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaaaagcaactggaaaataacagcgttcttttatgtgtgtagttttctgtgg
tctttgatctcagccaccatccagcaccaatcaagactgccagccattctgggtgccaat
cagagaactgatctctgcccaacaatcaggattggccaagatgacttaccaggctttgac
ctgatttctcagtttcaaatagaaaaagctgcttcccaaggaattatccagagagtagtg
ggctccacttctctacaagtggcttataaactgggacccaatgtagacttcaggatccca
accagtgccatatattccaatggactgccagatgaatattcctttctaactacttttcgg
atgactggggccacacttcagaaatactggactatctggcagattcaggattcttcagga
aaagaacaagttggagtgaatcttaatggtcaaatgaaaagtgttgagttttcttataaa
gcagccgatggaagtctccaaactgcatcatttttgcatttgcccttcttgtttgactcc
caatggcacaagcttatgataagcgtggaagcaaacagtgtcacactttttattgactgt
attaaaatagaatccttaaacataaaaccaaaagcaaaaatcagcattgatggttttgct
gtgattggaaaacttaaaaataatcctcaaatttcagttccgttcgaaatccagtggatg
gtgattcactgcgaccccctgcgaccccagcgcgaaggctgcggcgagctgccggcccgg
ataagccagacggtaatcgagagaggtctccccggtccaccaggcccccccggtccacca
gggccaccaggagttccgggtattgatggcattgatggggagagaggtccaaacggcccc
cctggtccaccgggtctggagggggatgcaggcaaaccaggatcccctggcctgcctgga
gagccgggagctgatggattcacaggacctgatggctcacgtggagccacaggaccaaaa
ggacagaagggtgagccaggacttccaggtgctcgtggacttccaggcaagggtcttctt
ggaccacctggcccagctggtgcagcaggacttcctggagaagtaggtcgtgctggtcca
cctggagatccaggaaaaagagggccaccagggctaccaggaccaccaggtcctcggggc
acaattggcctgcaagatggtgacctgttgtgtcccaatgcttgtccacctggccgccca
ggacatgctggcttaatgggaatgaagggacagaaaggttcaaaaggggagtctggtgaa
ccaggaagacaaggttataagggtgaagaaggggaccaaggacctagtggtgaagtggga
gctcaaggccctccaggcatcataggtatcagaggtataactggtatcatgggacctaaa
ggtaccaaaggagctcgtgggcttgatggtgagcctggtccccaaggccttcctggtgca
cctggtgatcaaggccagagaggctcactgggagaggcaggtccaaagggagaaaggggc
cctcaaggtacaagaggaataaatggtctccctgggccgaaaggagagtctggcttatca
ggagtcgatggccgggaaggcatccctggaatgcctggagcaaaaggtgaaccaggaaaa
cccggagctccaggtgatgcagggcttcagggactgccaggtttaccaggctctccaggt
gtgaaaggcattcctggaccaaagggtaatacaggtcgccctggagtgtcaggtttgatg
ggaagttctggtaaaccgggtgaacaggggccagagggagaagtaggtccaacaggaccc
cggggaccagcaggtagcagaggggagccaggtcctgcaggtcctccaggtataccaggg
aaatggggtccccagggtgatattggacttcctggactgccaggtcctccaggcctacct
ggtggtaagggtgaccggggttcagtgggtgaaccaggacccaagggtgaacaaggtgca
cctggagcacaaggagatggaggagaaaagggtgacttaggtgatatgggattaccagga
gcaaagggagctgttggtaatcctggagaccctggttcccgtgggcctgagggaagtcgg
ggactgcctggcatggaagggccgcgaggctcacctggaccacgaggcttgcagggtgaa
cagggtgccccaggtctgccgggcagccaagggccagctgggaaagaaccaactgatcag
cacattaagcaggtttgcatgagagtcatgcaagaacaactagctcagctggcggccagt
cttaggaggccagaatttggtgctccaggtcttcctggccgaccagggccaccgggtgct
ccgggacctgctggtgaaaatggcttcccaggacagcttggtccccgtggcttgcctggc
cttaaaggtccccctggtgagatcggtcgtaaaggtcctaaaggtgaaccaggagaaaga
ggagaaagaggatttccaggcagaggaccaaaaggttaccccggaccaagaggtcttcca
ggtgaaccaggcaaacccagctatggcagtgatggccgcgacggagaacgaggtccccct
ggagtggccggtcagcctggggttcctggtcctcctggccctcccggcccccctggctac
tgcgagccgtcggcttgtagaatggaggctggacagagagctgataagaacatgaaaggg
ccatga
DBGET
integrated database retrieval system
