Strigops habroptila (Kakapo): 115610410
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Entry
115610410 CDS
T08851
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115610410 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115610410 (POLR1A)
Enzymes [BR:
shab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115610410 (POLR1A)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
115610410 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
115610410
NCBI-ProteinID:
XP_030347759
LinkDB
All DBs
Position
7:6325383..6361296
Genome browser
AA seq
1709 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPATNGLYDLALGPPDS
REVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLKCHMLTCSRAVVHLL
LSQLKVLEKGLLHAVHDLEVVLNRFLEQCADATGSEIEEELNRHVQEILESYQVKDQCSN
VKNVCECRNKLIAQFWKTHMASKKCPNCKSRRSLVRKEHNSKLTVVYPSTVYHKSGEEGI
TDEPAVIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHESSEFSPDMFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDARMIRKLLVFMAKEQCQPIKFTEEQ
IQTETGENNEPLDHSVLTMIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLMTEKYPGIR
QLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREALAKQLLTPSSGAPQSGLKIVC
RHIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYR
GLTDKKGRIKVFPPAIMKPQQLWTGKQVVSTLLINVIPENHVPLNLTGKAKIGGRAWVKG
PANTCLNLDSMCESQVIIRKGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCL
GRLFTAYLQLYRGFTMGIEDILVKPEADHKRRKIIEKSSRRGIEAVRAALNLPETASSEE
VQEKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPLGLHRSFPENNLQLMVQSG
AKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYEFSPSSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPKQFPFIAENYEVIQKTKHLDEALARMESHQASQQFKAIKKWRARRQN
SVQREGGFLMFSQKKMASVKAQIPGGEIKNGRDAATLQLLKMWYELDEKKRRKYMKKTNK
CPDPSLGVWRPDTYFASVSEAFEHGVEDYIDKWESENRQSYVHPVLSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PTMSVPVLSTKKALKKVKQLKKKLTRVCLAEVLQKVEIEESLRVKCKQDKHRLYKIKFHF
LPHEYYREEKCVKPREILHFMETKFFKICLEAIKRKSAKMASFAEVSTRKTTRKDLDGDE
DKTQHNQDATAEEEENIVDAEADEGDGDATEAKRRKNQEEEVDYESEEENGEENIDENLE
EEEAESDKEEGTSGAEENQNGTDGVESQHLSFMSQTKKEKGRLLQSAELRVNAVVDSHSS
IQDYSFDTEHELWCEVSLALPLMKVYFDLSSLLVSLARSTVIHEVKGITRCLLNESTNKK
GEKELVLHTEGINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRAIIKEIKDVFAV
YGIVVDPRHLSLVADYMCFEGFYKPLNRYGIQSNSSPLQQMTFETSYKFLKEATMMGAYD
ELRSPSACLVVGKVVKGGTGLFDLKQPLK
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgccgaaagtggtgccgtggcggcggctggtcggggtctccttcgggatgtac
acggccgaggagatcaggaaactgagtgtaaaacccataacaaatcctcagtacttggac
aatgtggggaatccagccactaatggactctacgacttggctttgggacctccagactcc
agagaagtgtgtgcaacttgtatgcagaacttcagcaactgccctggtcattttggccat
atagagctgcctctgactgtctacaaccctctgttttttgataaattatacctcctcatc
cgaggttcttgtttaaagtgtcacatgctgacatgtagtcgagctgtggttcacttactg
ctgagtcagctgaaggttctggagaaagggctgcttcatgctgtccatgatcttgaagtc
gttctgaacaggtttttagagcaatgtgcagatgcaacaggttcagaaatagaagaagag
ctaaatcgccatgttcaggaaatactagagagttaccaagtaaaagatcagtgttcaaat
gtcaaaaatgtttgtgagtgtagaaataaactaatagcacagttctggaaaacacacatg
gcttcaaagaaatgcccaaactgcaaatctaggagatcgctagtgcgaaaagagcacaac
agcaagctgacagtagtctatccttctacagtgtaccataagtcaggagaggaaggcatt
acagatgagccagcagttattgatgaaagccagttggggaagagaggatacctgacaccc
atgactgcaaaggaatacatcctagctctgtggaagaatgaaggcttctttttgcgttat
ctcttccctgggatggatccccatgagagttcagagttcagcccagacatgttttttctg
gatctacttgtggtacctccttcaaggtatcgtcctgtaaatcgcgtcggagaccgactg
ttcacaaatggtcagactgtgaacctgcaggctgtcatgaaagatgcccgaatgatacgg
aagctcttggttttcatggcaaaggaacaatgtcagccaataaaatttacagaagaacaa
atccaaacagaaacaggagagaataatgaacctctggaccattctgtcctgacaatgatt
ccaggccagagcattgcagataagctgtacaacgcttggattcgtcttcagagccatgtt
aacattgtatttgatagtgatatggacaaactaatgacagaaaaataccctggtattcgt
cagctcttggagaaaaaggaagggctgttccgcaagcacatgatgggaaagcgcgtggat
tttgctgctcgatcagtcatttgccctgatatgtacattggtaccaatgagattggcatt
cctatggtatttgctaccaaactgacttatccccagccagtcactccctggaatgtcaaa
gagctgaggcaggctgtcataaatggcccaaaggttcaccctggggcctccatggtcatt
aatgaggatggatctcgtacggtgttgagtgcgagcagcctgacccagagggaagcccta
gctaagcagctcctcactccttcttcaggtgctcctcagtcagggctgaagattgtatgt
cgacatattaaaaacggagatgtacttttactgaaccgccagcccactcttcacagacct
tccatccaggctcaccgggcccgaatcctgcctggagagaaagtgctgaggcttcactat
gccaactgcaaggcttacaacgctgattttgatggggatgaaatgaatgcccatttccca
cagagtgagctgggtagagcagaagcttacaccttagcctttaccgacgagcagtatctg
gttccaaaggatgggaagccacttcctggcttgatccaggatcacatgatttctggagtc
agcatgacaatccgtggctgcttcttcaccagagagcaatatatggagcttgtttaccga
gggctaacagacaaaaaaggaagaattaaagtgtttcctcctgccattatgaaaccacag
caattatggacaggaaagcaggttgtttctactttgttaataaacgtcatcccagaaaac
cacgtcccactgaatctgactgggaaagccaagattggtggaagagcctgggtaaaggga
cctgcaaacacatgtctgaatcttgattcaatgtgtgagtctcaggttattattagaaaa
ggggaattactgtgtggagtcttggacaaagctcactttggcagctctgcctatggcctg
gtgcactgttgctatgaaatctatgggggtgaaaccagtgggaaagtgctaacgtgtcta
ggacgcctctttactgcttatctgcagctgtacaggggatttacaatggggattgaagat
attttggttaaacccgaagcagaccacaaaagacgcaaaatcattgagaagtcaagccgg
cgtggcatcgaagcagttcgagctgctcttaatttgccagaaacagcctcaagtgaggag
gtgcaagagaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggtt
gatctgaaattcaaggaggaagtaaacaattacaacaatgaagttaacaaggtttgtatg
ccccttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcagga
gccaaaggatccactgtaaatacaatgcagatttcatgtttgctgggtcagattgagttg
gaaggtcgaagacccccactgatggcatctggcaaatccctgccatgtttccagccttat
gagttttcccctagctcaggaggatttgtgactggcaggtttctcactggcatcaaacct
tctgaattcttctttcactgcatggctggcagggaagggctcgtggatacagctgtcaaa
accagccgctctggatacctacaaaggtgtatcataaagcatttggaaggactggttgtt
cagtatgacctgactgtacgagatagcgatggcagcgtggtgcagtttctgtatggagaa
gatgggcttgatattcctaaaactcaattcttacaacccaagcagtttcctttcattgca
gaaaactatgaggtaatccagaagacaaagcatctggatgaagcattagcaaggatggag
tctcaccaagccagccagcaattcaaagccatcaaaaagtggcgagccaggcgccaaaat
tcagtgcagagagaaggaggttttctgatgttttcccaaaagaaaatggcaagtgtaaaa
gcacagattccagggggtgaaatcaaaaacggaagagatgctgctactttacagttattg
aagatgtggtatgaactagacgagaagaaacgaagaaagtatatgaagaagacaaataag
tgccctgacccaagccttggtgtttggcgtccagatacttattttgcatctgtttcagaa
gcatttgaacatggagtggaagattatatcgacaaatgggaatctgagaacagacaaagt
tatgtgcacccagtactgtcttctgacagattgaaggatttgttgtatttaaagtggcag
cggtctctctgtgacccaggagaagctgtgggtctccttgcagctcagagtattggggaa
ccttccacacagatgactctgaacaccttccactttgctggcagaggtgaaatgaatgtc
acactgggtattccaaggttgcgggaaatactgatggtggccagcgcaaacattaaaaca
ccaacgatgagtgttcctgtgctcagtaccaagaaggctctcaagaaagtgaaacagctg
aagaaaaagctgacaagagtgtgcttagctgaggtcttgcagaaagttgagattgaggaa
tccctgcgtgtgaagtgcaagcaggacaaacatcgcctctacaaaatcaagttccatttc
ttgccccatgaatattaccgagaggagaagtgtgtgaagcccagggagatcttgcacttc
atggaaacaaagttctttaaaatctgtctggaagcaattaaaaggaagagtgcaaagatg
gcatcttttgctgaagtcagcactcggaagacaactcggaaagatttagatggtgatgaa
gacaagacacagcataatcaggatgctacagcagaggaagaagagaacattgttgatgcg
gaagctgatgaaggggatggtgatgctacagaagcaaaacggaggaagaaccaggaagag
gaggttgattatgagagtgaagaagagaatggggaagaaaacatagatgagaatctggaa
gaagaagaggctgaatcggacaaagaagaagggacttctggtgctgaagaaaatcagaat
ggaacagatggtgtcgagtctcagcatctgtccttcatgtctcagaccaaaaaagagaaa
ggtagactacttcagtcagcagagctgcgagtaaatgctgtcgtggacagccactcatcc
atacaggattactcatttgacaccgaacatgaactttggtgtgaggtttccctggcgctc
ccactgatgaaggtgtacttcgacctctcctccttgcttgtgtctctcgcacggagcaca
gttattcatgaagtgaagggcatcacacggtgcctgctgaacgaaagtaccaacaagaaa
ggagagaaggaactcgttctgcacaccgaagggattaaccttgcagagctgttcagatac
tctgatattttggacctgaacagactttattccaatgatattcatgccatggctaagaac
tatggaatagagtctgccctgagggcgattataaaggaaataaaagatgtatttgctgta
tatgggattgtggtagaccctcggcacctttcactcgtggccgattacatgtgttttgaa
ggattttataaaccactgaatcgttatggaattcagtccaactcctcccctctgcagcag
atgacattcgaaaccagctacaaattcttgaaggaagcaacaatgatgggtgcctacgat
gagctgcgatccccttctgcatgcctcgtggtgggaaaagttgttaaaggagggactggt
ttgtttgacctcaagcaaccccttaaatag
DBGET
integrated database retrieval system
