Strigops habroptila (Kakapo): 115610415
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Entry
115610415 CDS
T08851
Symbol
DDX60
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115610415 (DDX60)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115610415 (DDX60)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
115610415 (DDX60)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
115610415
NCBI-ProteinID:
XP_030347778
LinkDB
All DBs
Position
7:40349415..40393017
Genome browser
AA seq
1816 aa
AA seq
DB search
MDFRKVVHNAADENARNDDTDSEYSDSEKIGFIPKKEDKESGSTSDSAEEDESGDKRDAA
VERMLKEEEDREKEAEDIDYSKAYSIVTTEEVTEQASQTEGEAFRILHHECDSQSPGVRK
CLEYLRLHMWASLSRAQYVSLLKDFVESEFFVIDGDSLLLMFLDETTHYLNFFYQIECFL
QDFTDKGAKYVIAFFKDAEQMYFPYPHFLFLRTALIEHLRHNTSITVHTEFSNCLSSQWE
IFLKKSYPYFIIVSDIGLSSLQTXLSILIAHSLSKKINVVLTSGQEYDILRVYGYHVQSV
YKHRLFFVKHEQDLRYAYGNLVKYKNPFMCLYEHFKLSLKSIQQEVHQIVCLLKQLWPEG
SDIRRVICVLACAVGLKIYSNMLENANNSMGTKKKRSARGRSKALSLKEAADLCRMQCLA
VTFLLRMPLSQRAQIRIMKSCWTKQVLSFIKMQQLCMHFALTQLSNTNDWKLDLTYLPDL
YDDSLLINLAYYYEVEYNKGLKFKKELGKEMEDEYQCLWDTVRKLTVKYCFGDAFPIRNT
SQPFLDQQHTFFREYEGKIPNIGLISVESDLVEDYAGDVLKDLPVLKSNDPAVTSLIKHK
EFDELRHWHSGRPLTEEYERVRCTADAKSKGPAERRQIQKLQAFRHFYGSTLEDATSKLI
VHQEDVSGSADAAVKKTQKKHKSKVEKIAEENTRRLRAKEEKKEEEQWKALCIPTEKEIK
ADVTAGISKLEKFLKALKSKSVKFSVEMTGLSACLEAWKEHCKTQGSKDKDLSKAVQVMR
RLHILLEKYQDMLEKPHLEKLTRCLRYLGFENLACSLSGQAGESNDKKISNYAIKVGPAR
FQLQYMDYYLLREERHDPDPRVQHFIPDTWQRELLDAVDNNESAVIVAPTSSGKTYASYY
CMEKVLKTSNEGVVVYVAPTKALVNQVVGTIYSRFTKKLPDGLVVCGVFTXDYRHDVMNS
QILVTVPQCLEILMLSPRCQKWAKQIQYVIFDEVHCLGGEIGAEVWEHILVTIRCPFLAL
SATVSNPEHLTEWLQSVKRYWQCAEKRIERSSANSEKNFSRKYKGKSKVQEQKQSYRVRL
VLYEERYNDLEKYVCSLRSRDFLIEYYHPCAALTVNHIENYGIPSDLSLSPRESIQLYDT
MVKVWRGWPRAQELDPEAFVCFKNKVVIKKADVRKYEQELKKELSKWIVLGQRQKVNELL
ECLKPKPVDCSEEEKWKHFASFVNRLHEMDKLPALFFIFNVDTVESAARNIFLYLLKKQR
RIQGSDIEQERNRFRAKLRKVNKRVGKFNPADTKKVNPSKMENTVVLLTKKTQLEKRLKG
LTDIPSSCTYANPEAVDEDTLMKIFHRLRFERRGYLQQRLALRGIGYHHASMSSKERQVV
EMLFRMGYIKVVTATSSLALGINMPCKSVVFAEDSVFLDALNYRQMSGRAGRRGYDMIGN
VFFYDIPMPKVERLIKSNVPELRGQFPLTISLILRLMLLAEKADDKEDAKAKALSVLKHS
LMSFRKERYAQILKIYFMFSLQFLIKEGYLDQKGKPIGFAGLVTHLHYHEPSNFVLVSFL
VKGLFHKLCQPIKGSAVFAEDVLEKLVLILANLFGRKYLPACSVKYKHTFCQSKVFLEDL
PADFAEAVNEYNTKAEENFAHFLLTTTKLADMEQEYRLPLSKTDFTPKNWHGSELASYLM
DTTKSVFAISPFACVSGMVDNDLFLGESINKAVLRSLGVNVTNCPLLYLNKYDNQGRRQP
LNAYALDFYKHGSLIALTTDNWLNEGDAYYALKEFSLIIKSMGTSLSELCDDPNDNVLLA
FQQLGKIYEEKLQCIT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaggaaagttgttcataatgctgcagatgagaatgctcgaaatgacgatacg
gatagtgagtatagcgacagtgagaaaattggcttcattccaaaaaaggaggataaagaa
agtgggagcacaagtgacagtgctgaagaggatgagtctggtgacaaaagagatgcagct
gttgagcgaatgctgaaagaagaggaagatagagaaaaagaagctgaagacatagactac
agtaaggcttacagtattgtgacaactgaagaagtgacagagcaggcatcgcaaactgaa
ggcgaggcgttcagaattctccatcatgaatgtgattcccaaagtcctggagtaagaaaa
tgtcttgaatatctgaggctacacatgtgggcatccctatcaagagctcagtatgtcagt
ctgttaaaagactttgttgagtctgaattctttgtaatagatggggattccttactactt
atgtttttagatgagacaacacactatctgaacttcttctatcaaattgaatgcttcctg
caggatttcactgacaaaggagcaaaatatgtcattgctttcttcaaggatgcagaacag
atgtactttccgtatcctcattttcttttcttacgtactgcattaatagaacacctgagg
cataacacaagcatcactgttcatacagaattttccaattgtttatcatcccaatgggag
attttcctgaagaaaagctatccttacttcatcattgtatctgacataggactgagctct
ctccagacanatttgtctattttaattgctcattcactgtcaaagaaaatcaacgttgtg
ctcacttcaggacaggagtatgatattcttagagtttacggatatcatgttcagagtgtg
tataagcacagattattttttgtaaagcatgaacaagatctgcgatatgcctatggaaac
ctagtcaagtacaaaaatccattcatgtgtctatatgaacatttcaagctgagcctgaaa
agcatacaacaagaggttcaccagattgtctgtctgttgaaacaactgtggcctgaagga
tctgacattcggcgtgtgatctgtgtccttgcttgtgctgtgggattaaaaatatacagc
aacatgttggaaaatgcaaataattccatgggaacaaagaaaaagcgatcagcaagagga
agaagtaaagccttatctctaaaagaagcagctgacctctgtagaatgcagtgccttgca
gtgacttttcttcttcgtatgcctctttcacagagagctcagattaggatcatgaaatca
tgctggactaagcaagttttatcatttataaaaatgcaacagttgtgtatgcattttgct
ctgacacagctaagcaatacaaatgattggaaattggatttaacttacctgccagactta
tatgatgattcactgctcataaatcttgcatattattatgaggtcgaatacaataaagga
ttaaagttcaaaaaggaattggggaaagaaatggaggatgaataccaatgtttatgggac
actgtaagaaaattgactgtgaaatactgttttggagatgctttcccaatacgaaacacc
tcccaaccatttcttgatcagcaacatacgttttttagagagtatgaaggaaaaattcct
aacattggactaatttcagtggaatctgatcttgttgaagattatgctggagatgttttg
aaagacctacctgttttaaaaagcaatgatcctgcagttacttcacttattaaacacaag
gaatttgatgagcttcgtcactggcattctggcagacctttgactgaggaatatgagcga
gtacggtgcactgctgatgcgaaatccaaaggtccagcagaaagaagacaaattcagaag
ttacaggcttttcgtcatttttacgggagcactttggaagacgccacttcaaaacttatt
gttcatcaagaggatgtgtcagggagtgctgatgctgctgtcaagaagacccaaaagaag
cataaaagtaaagtggaaaaaattgcagaggaaaacaccaggcgattaagagctaaggaa
gaaaagaaagaagaggagcaatggaaagccttgtgtataccaactgaaaaagaaataaaa
gcagatgtgactgctggaataagtaaattggagaagtttctcaaggctcttaaaagtaaa
tctgtgaagttcagtgtagaaatgacaggactgtctgcctgtttagaagcgtggaaggaa
cactgcaaaacacaaggcagcaaagataaagatttaagcaaagctgttcaagtcatgagg
agacttcatattctccttgaaaaatatcaagatatgttggagaaaccacatctagaaaag
ctgaccagatgtcttagatatcttggatttgagaatttggcatgctccctatctggccag
gcaggagaaagtaatgataagaagattagcaactatgctatcaaagtgggtccagctcgc
tttcagctacaatacatggattattacttgctcagagaagagagacatgatccagatccc
cgagtgcaacatttcatacctgacacatggcagcgggaacttcttgatgctgtagataat
aatgagtctgcagtgattgttgctcccacttcgtcaggaaaaacatacgcatcatattat
tgcatggaaaaagttctgaaaacaagcaatgaaggggttgttgtgtatgttgctcctaca
aaggcccttgtaaaccaagtggtaggaactatatacagtcggttcaccaagaaacttccg
gatggattggtagtgtgcggagtcttcacgtgagattatcgccatgatgttatgaattct
cagatactagtgaccgtgcctcagtgtttagaaatcctgatgctgtctcctcgttgccag
aagtgggccaaacagatacaatatgttatatttgatgaggtccattgtcttggtggtgaa
attggagcagaggtttgggagcacattttagtaacaattcgatgtccgtttttggcactc
tctgctactgtcagtaatccagaacacctaactgagtggttacagtctgtgaagaggtat
tggcaatgtgctgagaaaagaatagaaagaagctctgcaaactctgagaagaacttttca
agaaaatataaagggaaatctaaagtccaagaacaaaagcaatcataccgtgttagacta
gtcttgtatgaagaaagatacaatgatttggaaaagtatgtgtgttctctaaggagcagg
gattttctcattgaatactatcatccgtgtgctgcattaacagtgaatcacattgagaac
tacggtattccttcagatctttctctgtctccacgagagagcatccagctttatgacaca
atggtaaaagtctggcgagggtggccgagggcccaggagctagatcctgaggcatttgtc
tgtttcaagaataaagtagtaataaaaaaggcagatgtgaggaaatacgaacaggaactg
aagaaagaacttagcaaatggattgttcttggccaaagacagaaggtgaatgagctactg
gagtgccttaagccaaaacccgtggattgctcagaagaagaaaagtggaagcattttgca
agctttgttaatagattacatgagatggataagttgcctgctttattttttatatttaac
gtggatacagtggaaagtgcagccaggaatatattcctttatttgctgaaaaaacaaagg
cgtatacaaggctctgatattgagcaggaaagaaaccgatttagggccaaactaagaaaa
gtgaacaaaagggtaggaaaattcaaccctgcggataccaaaaaggtgaaccccagtaaa
atggaaaacactgtggtgcttttgactaaaaaaacccaattggaaaaaagacttaaaggg
ctaactgatatcccttcttcatgtacttacgccaatcctgaagcggtggatgaagatact
ttgatgaagatttttcatcgacttagatttgagagaagaggttatctgcagcaaaggttg
gcactgaggggcattgggtatcatcacgcatctatgtccagcaaggaaagacaagtagtg
gagatgcttttcaggatgggctatatcaaggtagtcacagccacttcatcgcttgctcta
ggaatcaacatgccatgtaaatctgttgtctttgctgaagattctgtctttttagatgcc
ctaaattacagacagatgtcaggacgtgctggaagacggggatatgatatgattggaaat
gtgttcttctatgacatcccaatgcccaaagttgaaagacttatcaaatccaacgtacct
gagttgagaggccagtttcctctgactatttccttaatattgagactgatgctcttggct
gaaaaggctgatgacaaagaggatgccaaagcaaaggcattgtcagtgttgaagcactca
ctgatgtcgttcagaaaagaaagatatgctcaaatactaaaaatttattttatgttttcc
ttgcaatttctgatcaaagagggctacttggatcaaaaaggtaaacccataggatttgct
ggacttgtgacacacttgcactatcacgaaccttcaaattttgttttagtgagctttctt
gtgaaaggtttattccacaaattgtgccaaccgattaaaggctcagctgtttttgcagaa
gatgtcctggaaaagctagtgctcattctagccaacctctttgggagaaaatatcttcca
gcctgctcagtgaaatacaaacacacattttgccagtcaaaggtctttctagaagatctg
ccagcagactttgcagaggctgtaaatgagtacaacaccaaagcagaggaaaattttgct
cattttcttctgacaactaccaagctggcagatatggaacaagaatacagacttccactg
tcaaagacagattttacacccaagaattggcatggctctgaactagcatcttatttgatg
gacaccaccaaaagcgtatttgccatctcaccttttgcctgtgtatctggaatggttgat
aacgatctatttcttggggagagcattaataaagctgtcttacgttcccttggagttaat
gtcacaaactgcccccttctttatttgaacaagtatgataaccaaggaaggaggcagcca
ctcaatgcatatgcactggacttctataagcatggatccttgattgcactgacaactgat
aactggttaaatgaaggagatgcttactatgcactcaaggagttttcactcatcattaag
tctatgggaacatcactgagtgaactgtgtgatgatccaaatgacaatgttctactggca
tttcaacaactgggcaaaatctatgaagagaaactgcagtgtattacctga
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integrated database retrieval system
