Strigops habroptila (Kakapo): 115610554
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Entry
115610554 CDS
T08851
Symbol
SMARCA5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115610554 (SMARCA5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115610554 (SMARCA5)
03036 Chromosome and associated proteins [BR:
shab03036
]
115610554 (SMARCA5)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
115610554 (SMARCA5)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
115610554 (SMARCA5)
RSF complex
115610554 (SMARCA5)
WICH complex
115610554 (SMARCA5)
B-WICH complex
115610554 (SMARCA5)
NORC complex
115610554 (SMARCA5)
BRF complex
115610554 (SMARCA5)
NuRF complex (fruit fly)
115610554 (SMARCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
115610554
NCBI-ProteinID:
XP_030348113
LinkDB
All DBs
Position
7:complement(64069930..64093294)
Genome browser
AA seq
1042 aa
AA seq
DB search
MSAGQQQPPLPPSQPDEVPAPLPGANSSEAAGTVPSAIGQAGGDTEMEESFDDASPGKQK
EIQEADPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDE
KQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEESPSYVKWGKLRDYQVRGLNWL
ISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRW
VPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAH
RIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDT
NNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD
IDILNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKL
LPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSS
KFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDN
TVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFASKESEITD
EDIDHILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKMAFTEWI
EPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILY
YRKTIGYKVPRNPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGFTNWNKRDFN
QFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARI
QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYD
ELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPS
SAQKRKMDGTPDGRGRKKKLKL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgggcagcagcagccgccgctgccgccgtcgcaaccggacgaggtgcccgcg
ccgctaccgggcgccaacagcagcgaggccgcggggacagttccctctgccatcggccag
gccggtggcgacaccgagatggaggaatcttttgatgatgcatcgccaggaaaacaaaaa
gaaatccaggaagcagatcctacatatgaagagaaaatgcaaacagacagagcgaacaga
tttgagtatctgttgaagcagactgagctgtttgctcatttcattcagcctgctgctcag
aaaactccaacttcacctttgaaaatgaagcctggacgtccacgaataaagaaggatgag
aaacagaatttactgtcagttggcgactaccgccatcgtagaacagagcaggaagaagac
gaggagctgttaacagaaagctccaaggcaactaacgtctgcactcgatttgaagaatct
ccatcatatgttaaatggggaaagctgcgtgattatcaggttcgaggattgaactggctc
atctctttgtatgaaaacggcatcaatggtatcctggcagacgaaatgggtctggggaag
acgctgcaaacaatttctcttcttgggtatatgaaacactacagaaatattcctggtcct
cacatggtgttagttcctaagtctactctacataactggatgaatgaattcaagagatgg
gtccctacgcttcgagcagtttgtttgataggtgacaaagaccagcgagctgcctttgtc
agagatgtgttgctgcccggagaatgggatgtctgtgtaacatcatatgaaatgcttatc
aaagagaaatcagtattcaaaaaattcaactggagatacctagttatagatgaagcccac
aggattaaaaatgaaaaatcaaagttatcagaaattgtgagggaattcaagactacaaat
cggctgctattaactggaactccactgcagaacaacttacatgaactctgggcacttctt
aacttccttttgccagacgtctttaactcatctgaggactttgattcatggtttgatacg
aacaactgtctaggagatcaaaagttggtggaacgtctccatatggtgctacgaccattc
cttctacgtcgcattaaggctgatgtagagaaaagcttgcctccaaagaaggaagttaaa
atttacgtgggtctcagcaaaatgcagcgagaatggtatacacgaatcctaatgaaggat
atagatatactgaattctgctgggaagctggacaaaatgagactgctgaatatcctcatg
cagctgcgaaaatgttgcaaccatccgtatctctttgatggagcagaacctggtccacct
tacaccacagatatgcatttggtcaccaacagtggcaaaatggtagtattggacaaattg
ctcccgaagttgaaagaacaaggttcaagagtcttaatcttcagtcagatgaccagagtc
ctagatatcttggaagattactgtatgtggcggaactatgaatattgtaggctggatgga
caaacaccacatgatgagagacaggcatctattaacgcgtataacgaacctggtagctca
aaatttgtgttcatgttgagtacacgggcaggaggacttggaatcaatttggctactgct
gatgttgtaatcctgtatgattcagattggaatccacaagtagatcttcaggctatggat
cgagcgcacagaattggccaaacaaagactgttcgggtgttcaggtttatcacagacaac
acagtggaagaaagaatagtggaacgtgcagaaatgaagctccggctagattccatagtc
attcagcaaggaagactggtggatcaaaacctgaataaacttgggaaggatgaaatgctg
caaatgattaggcatggagcaacacatgtgtttgcctcaaaggaaagcgagattacagat
gaagatattgaccacatcttggaaagaggtgcaaagaagactgcggaaatgaacgaaaaa
ctttcaaagatgggtgaaagctcactcaggaatttcacaatggatacagagtccagcgtg
tataattttgaaggggaagactacagggaaaaacagaagatggcctttacagagtggatt
gaaccaccgaaacgagaaagaaaagccaattatgctgtggatgcttacttcagagaggct
cttcgagtcagtgagccaaaagcacccaaggcaccacggcctccaaaacagccaaatgta
caggacttccagttctttcctccacgcctctttgaactattggaaaaagagattctctac
tacaggaaaacaattgggtacaaggtacctcgtaaccctgatctgccaaatgcagcccaa
gcacaaaaggaagagcagcttaagattgatgaggctgaaccacttaatgatgaagaacta
gaagaaaaagagaagctcctaacccagggattcactaattggaataagagagattttaac
cagttcatcaaagctaatgagaaatggggccgtgatgacattgaaaatatagcacgagaa
gtggaaggaaaaaccccagaggaagtcattgagtattcagctgtgttctgggaaagatgc
aatgaactccaagacatagagaagatcatggctcagatagaaagaggagaagccagaatc
cagagacgaatcagcataaaaaaagcacttgatacaaagattggcagatacaaagcccct
ttccaccagctaagaatatcttatggtactaataaagggaagaattacactgaagaggaa
gatcgttttctaatctgtatgcttcacaagctaggatttgataaagaaaatgtctatgat
gaattaagacagtgcatccggaactccccacagttcagatttgactggtttctcaagtcc
agaactgcaatggagctgcagaggagatgcaatactttaatcaccctgattgaaagagaa
aacatggaactggaagaaaaggaaaaggcagaaaagaagaaacgtggaccaaaaccatct
tcggcacagaagcgcaaaatggatggtactcctgatggtcgtggaagaaaaaagaagcta
aagctgtga
DBGET
integrated database retrieval system
