Strigops habroptila (Kakapo): 115610753
Help
Entry
115610753 CDS
T08851
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115610753 (COL25A1)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115610753 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115610753
NCBI-ProteinID:
XP_030348590
LinkDB
All DBs
Position
7:complement(54465789..54772343)
Genome browser
AA seq
675 aa
AA seq
DB search
MGGGGKEIRAAAAEGCKGALVKSRGAAGRDGSGQRGRGRDCCPRWAGPCGSALAALLSAL
AAASCVYLGVRTSDLQARVAAIEGARGGFSTAAPLPLLPGFSLEQLNAMMQEKVERLLAQ
KSYEHLAKIRVAREAPPECNCPPGPPGKRGKRGRRGETGPPGQPGPQGPPGPKGEKGDQG
DQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRG
MPGLPGEPGKPGEQGLIGPQGPPGQKGSVGVPGVPGRDGQVGEPGLPGITGEKGAAGLKG
DPGERGEKGDAGENGQKGDTGEKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGI
KGEPGFIGPQGEPGLPGLPGTKGDRGEAGPVGRGERGEPGVPGPKGKTGEPGSRGPKGSK
GDTGDRGDTGSTGPRGPPGQKGDQGATEIIDYNGNIHEALQRIATLTVTGPPGPPGPQGL
QGPKGEPGSPGTPGVDGEQGPKGSKGDTGDPGISGEKGGIGLPGLPGANGMKGEKGDVGL
PGAQGPSMIGPPGPPGPHGPPGPMGPHGLPGPKGVDGPVGPHGPAGPKGERGEKGTIGDP
GPRGPYGLPGKDGEPGIDGFPGPRGEKGDIGEKGEKGFRGIKGEKGEPGQPGLDGLDAPC
QLGPDGLPMPGCWQK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggggggcggaggaaaggaaatcagagctgccgcagctgaagggtgtaaaggcgcgctg
gtgaagagccgcggagccgcaggacgggatggcagcgggcagcgcggccgtggcagggac
tgctgcccgcgatgggccgggccgtgcggctcggcgctggcggctctcctctccgcgctg
gccgccgcctcctgcgtctacctgggggtgcggaccagcgacctccaggccagggtcgcg
gctatcgagggcgcccgagggggcttctctactgccgccccgctcccgctgctgcccggc
ttttccctggagcagctgaacgcgatgatgcaggagaaagtggagcggcttctcgcccag
aaatcctacgagcacttggcaaaaatacgagtagcgagagaagcgcctccagagtgcaac
tgcccaccaggtcctccagggaaaagaggtaagcggggcagaagaggagagactggacct
cctggtcaacctggtcctcaaggccctcctggtccaaaaggcgagaagggagatcaaggt
gatcagggccctcggatggtgtttcctaaaatcaatcatgggtttctctcagctgatcag
cagctcattaaacgccgcctcattaagggggaccaaggacaagctggaccccctggacct
ccagggccaccaggacccagagggccaccaggagataccggcaaagatggtcctcgtggg
atgcctggcttaccgggtgagccaggaaaaccgggagaacaaggattaataggacctcag
gggcctccaggacaaaagggttctgtcggagtgcctggtgttccagggagagacggacaa
gtgggtgaacctggtttgcctggcataacaggagagaagggagcagcagggcttaagggt
gaccctggagaaagaggagaaaagggtgatgctggagaaaatggacagaagggtgacaca
ggagaaaagggtgaccctggttcttctgctgcaggaattaagggtgaacctggtgaatct
ggacggcctggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggata
aagggtgaaccaggtttcattggtcctcaaggagaacctgggttgccagggctaccagga
acaaagggtgacagaggagaggctggtcctgttgggaggggtgagcgaggtgaacctgga
gttcctggaccaaagggaaaaacaggtgaacctggatctagaggtccaaaagggtcaaag
ggtgatacaggtgacagaggtgacacaggatctacaggtccacggggaccacctggacag
aaaggcgatcaaggtgcaacagagataattgattataatggcaatatccatgaagctctg
cagaggatcgccaccctgactgtcacggggccaccaggaccaccaggaccccaagggcta
caagggccaaagggtgaaccaggatccccaggaactccaggagttgatggcgagcagggt
cctaaaggctcaaaaggcgatacaggtgatcctggaatatctggagaaaagggaggaatt
ggacttcctggcctgccaggagccaatggtatgaagggcgaaaaaggagatgttggtttg
cctggtgcccaaggtccttcgatgataggaccaccgggaccaccaggtccacatggtcct
ccaggccctatgggacctcatggactgcctggcccaaagggtgtagatggcccagttggt
ccccatggccctgcaggtcctaaaggagagagaggtgaaaagggaaccattggtgaccct
ggacccagaggaccatatggcttgcctggtaaagatggagagcctggcattgatggtttc
cctggtcctcgaggagaaaagggtgatataggagaaaagggagaaaagggattccgtgga
attaagggggaaaaaggggagccaggccagcctggcctggatgggctggatgccccttgc
caattgggtcccgatggattaccaatgcctggctgttggcaaaagtga
DBGET
integrated database retrieval system
