Strigops habroptila (Kakapo): 115610776
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Entry
115610776 CDS
T08851
Symbol
POLR2B
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03020
RNA polymerase
shab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115610776 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
115610776 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115610776 (POLR2B)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115610776 (POLR2B)
Enzymes [BR:
shab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115610776 (POLR2B)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115610776 (POLR2B)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115610776 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
115610776
NCBI-ProteinID:
XP_030348630
LinkDB
All DBs
Position
7:47226099..47246207
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLKSGVWKTWKEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSCHGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcagtatgatgaagacgatgatgaaatcacccccgac
ttgtggcaagaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagctggattcttttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcatgccacaggagaagtggaagag
ccgccccggtatctgttgaagtttgaacaaatctacctctctaaacctacacattgggaa
agagatggagcaccctcacctatgatgcccaacgaagccaggctgaggaaccttacgtat
tcagcccctttgtatgtggatataactaaaacagttattaaagaaggggaggatcagtta
caaacacagcatcagaaaacttttataggaaaaattcctattatgttacgttcaacatac
tgtttgttgaacggcttaacggaccgtgatctttgtgaactgaatgaatgcccgcttgat
cctggtggatactttatcattaatggatcagaaaaggttctgattgctcaagagaaaatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctctcgaccaacaagtactatatgggttagcatgctg
gccagaggtgggcagggtgcgaagaagagtgctattggtcagcgcattgtagccaccttg
ccatatatcaaacaagaagtccccatcataattgtctttcgtgcactaggctttgtgtct
gacagggacatcttagagcacatcatatatgattttgaagatccagaaatgatggaaatg
gtcaaaccttctctggatgaagcatttgtcattcaagagcaaaatgttgctctaaacttc
attgggtcaagaggtgcaaagccaggtgtcaccaaagagaagagaatcaagtatgctaaa
gaagtcttgcagaaggaaatgctcccacacgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagattgttgctggcagcactgggaagaaga
gagcttgatgacagagatcattatggcaacaaaagactggatcttgctggaccactgtta
gctttcctgttcagaggaatgttcaagaatttgctaaaggaagtgagaatatatgcacaa
aagttcattgacagagggaaagatttcaacttggaactggcaattaaaacaagaattatt
tcagatggtttgaagtattcactggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtgtctcaggtgttaaaccgcctgactttcgcatctacgctatcc
cacctgagacgcctgaattctccaattggtcgagatggcaaactagcaaagcccagacag
ctgcacaacacgctgtggggaatggtttgccctgctgagaccccagagggtcatgcagta
ggacttgtgaagaacttagccctgatggcttacatttctgtggggtctcagccatcccca
attttggaattcttgaagagtggagtatggaaaacctggaaagaaatatctccagcagca
atagctgatgctaccaagatctttgttaatggctgctgggtgggaatacacaaagatcca
gagcagctcatgaataccctaaggaagctccgtcgtcagatggacatcattgtgtcagag
gtctcaatgattagagatattcgtgagcgagaaatccgcatctacactgatgcaggcaga
atttgtcgaccccttttaattgtagaaaaacagaagctgctgttgaagaaaaggcatatt
gaccaactgaaggaacgagagtataacaactacagttggcaggatctcgtggccagtggt
gtagtagagtacattgacacactggaagaagagactgtgatgctggcaatgactccagat
gatttacaagagaaaggtgtggcatattgttcaacatacacacactgtgagattcaccca
tctatgatcctgggagtatgtgcatctattatcccttttcctgatcacaaccagtctccc
aggaacacctaccagtcctgccatgggaaacaggctatgggagtttacattacaaacttt
catgttcgtatggatacactggctcatgtcttgtactaccctcagaagccccttgtaacg
acacgctccatggagtacttgagatttagagagttaccagcaggtatcaactcgattgta
gccattgcatcatacacaggctataaccaggaagactctgtcatcatgaaccgttctgct
gttgacagaggctttttcagatctgtgttctatcgctcatacaaagagcaggagtctaaa
aaagggtatgaccaagaggaagtttttgagaagcctacacgtgaaacttgccaaggtatg
agacatgcgatctatgacaaacttgatgatgatggtttgatagcacccggggtacgtgtg
tctggggacgatgtcatcattggcaaaacagtaacgctgccagagaatgaagatgaactg
gaaagcactaacagacgtttcaccaagagggactgcagcactttcctgcgaactagtgag
actggcattgtagatcaggtcatggtaacccttaaccaggaaggatacaagttctgcaag
attagggtacgctctgtgagaatcccacaaattggagataaatttgccagcagacatggt
cagaaaggaacctgtggtatccagtacaggcaagaggatatgccctttacctgtgaaggc
atcacacctgatataattatcaacccccatgccatcccttcccgtatgaccattggtcac
ttgattgagtgtctccaggggaaggtgtctgcaaacaagggagagattggcgatgctaca
ccttttaatgatgctgtcaacgtgcagaagatttccaatcttttatcagattatgggtat
catctaagaggaaatgaggttctctacaatggcttcactggtcgaaaaatcacatcacag
atcttcattggtcctacgtattatcagcggttgaagcacatggtagatgacaaaatccat
tctcgtgcaagagggcctatccagatacttaacagacagcccatggagggtcgatctcgt
gatggtggccttcgttttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaagattgtttgaagcctcagacccataccaagtccatgtctgcaat
ctctgtggcatcatggcaattgcaaacacaaggactcacacctacgaatgccggggatgc
cgtaataaaactcagatatctttggttcgaatgccctacgcctgcaaactcctcttccaa
gaactgatgtctatgagtatcgcgcctcgtatgatgagtgtttag
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integrated database retrieval system
