Strigops habroptila (Kakapo): 115610856
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Entry
115610856 CDS
T08851
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115610856 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115610856 (SMARCC1)
03036 Chromosome and associated proteins [BR:
shab03036
]
115610856 (SMARCC1)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115610856 (SMARCC1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115610856 (SMARCC1)
PBAF complex
115610856 (SMARCC1)
GBAF(ncBAF) complex
115610856 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
115610856
NCBI-ProteinID:
XP_030348784
LinkDB
All DBs
Position
1:97563544..97649153
Genome browser
AA seq
1133 aa
AA seq
DB search
MRGVRRVGGAGPRWRRSARVTMAAAVAAGGGTGPGAAAAAAVAVSGGPALAALSVARRKD
GGPTGKFWESPETVSQLDSVRVWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKH
VTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRSTFPRHNRRRFDLQNPSRMD
RNVEMFMNIEKTLVQNNCLSRPTIYLIPDIELKLANKLKDIVKRHQGTVTEEKSKATHHV
YPSPTSMDDDEWLRPVMKKDKQVLVHWGFFPDSYDTWVHANEIDAEIEDPPIPEKPWKVH
AKWILDTDVFNEWMNEEDYEVDENRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRK
HSPSPPPTPVESRKKTGKKGQAALYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPK
NVNPKKDSENTPVKGGTVADLDEQDEETVATGGKEDEDPNKGDQSRSVDPGEDNVTEQTN
HIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLTGDVCAVMRVHAFLEQWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLM
PLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVP
FSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARA
SGKVDPTYGLESSCIAGTGPDEPEKIDGAEEEKMETETDGQQPEKVENKAESEVEEGDKV
QEGENERNTEKEQDSEVTADTKPEEKEAEENKENVDASKDKENEAGKKKVEHEISEGNVA
TAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEA
LEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQHSQNPQQPHQHSGGPGMNPLGAPAHP
GLLPHQQPPPYPMMHHQMPPPHPPQPGQMPGPSSMIPGQPMPGRMMPSVAANIHPAGSGP
PPPGMSPMTGNLIGPRVPLAAPNGMYPPPAQPPPPAEGVTPPPAGAPPASAAP
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgtgaggcgggtgggaggtgcagggccgcggtggcggcgctcggcgagggta
acaatggcagcggcggtagcggcgggcggagggactgggcccggggcagcggcggcggcc
gctgtggcggtgagcggaggccccgcgttggcggcgctgtcggtggcgcggcggaaggac
ggcggccccacggggaagttctgggagagcccggagaccgtgtcccagctcgactcagtc
cgtgtctggctggggaagcactacaagaagtatgttcaagcagatgctcctaccaataaa
acactggctgggctggtggtgcagctgctacaattccaggaagatgcctttggaaaacat
gtcaccaatcctgccttcacaaagcttcctgcaaaatgtttcatggatttcaaagctgga
ggtacattatgccacattcttggtgctgcttacaaatacaagaatgaacagggctggaga
agtacctttcctcgtcataataggcggaggtttgacctgcagaatccatcccgaatggat
cgaaatgtggagatgttcatgaacattgagaaaacactagtgcagaacaactgtctgagc
agaccaaccatctacctcattccagatatagaattgaagttggctaataaattgaaggat
attgtcaaacgtcaccagggaacagtaactgaagagaaatcaaaggctacccaccatgtt
tatccaagtcctacctcaatggatgatgatgaatggttgagacctgtgatgaaaaaagac
aagcaggtgctggtacactggggcttttttccagacagttatgacacttgggttcatgcc
aatgaaatagatgctgaaatcgaggatcctccaattcctgaaaagccatggaaggttcat
gccaagtggattttggacacagatgtattcaatgaatggatgaatgaagaggattatgaa
gtagatgagaacaggaaatcagtgagttttcgacagagaatctccatgaaaaatgaagag
cctgtccgtagtccggagaggagagacaggaaagcagcagcaagtacaaggaagagaaag
cattctccttctccaccccccactcctgtggagtcgagaaaaaagacagggaagaaagga
caagcagccttatatgggaaaaggagaggacagaaagaagaagatgagcaagaagatctt
acaaaggacatggaggatcccacaccagtacctaatatagaagaagtggtacttcccaaa
aatgtgaacccaaagaaagacagtgaaaacacacctgtgaaaggaggaacagtagcagac
cttgatgaacaggatgaggagacagtggcaaccggaggaaaggaagatgaagatcctaac
aaaggtgatcaaagtcggtcagttgatccaggtgaagataatgttacagaacaaaccaac
cacatcattattccaagctatgcatcttggtttgactacaactgtattcatgtgattgaa
cgtcgtgctcttcctgaattcttcaatggaaaaaacaagtccaagactccagaaatatat
ctggcttaccgcaacttcatgattgacacctatcgcttaaaccctcaagagtacttgacc
agcactgcctgcagaaggaatctgactggagatgtgtgcgctgtcatgagagtacatgct
tttctggagcagtggggtctcattaactaccaagtggatccagaaagccgtcccatggca
atgggccctcctcctactcctcacttcaacgtgctggctgatacaccctctggactcatg
cctctccatatccgcactccgcaggttccagctgctcagcagatgttgagttttccagag
aagaacaaggagaaaccgactgatctgcagaactttggacttcgcacagacatatactca
aaaaagactttagcaaagagtaaaggtgcaagtgctggaagagaatggacagaacaagag
acattgctgctattagaagctctggagatgtacaaagatgattggaacaaagtctcggag
catgttgggagccgtacccaagatgagtgcattcttcattttctgagacttccaattgaa
gacccctatttggagaactccgacgcgtctctgggcccgctggcgtaccagcccgtcccc
ttcagccagtctggcaatccagtgatgagcaccgttgcttttttggcatcagtggtggat
ccccgggtggcatcggccgcagcaaaggctgcgttagaggaattttctcgtgtcagagag
gaggtaccgctggagctcgttgaagctcacgtaaagaaagtacaggaagcagcaagagcc
tctgggaaggtggatccaacatatggactagagagcagctgcattgccggaacaggtcca
gatgagccggagaaaatcgatggagctgaagaagaaaagatggaaaccgagacagatggg
caacagcctgagaaggttgaaaacaaagcagaaagtgaagttgaggaaggtgataaagta
caagagggagaaaatgagaggaatacagaaaaagagcaagatagcgaagtgactgcagac
actaagccagaagagaaggaggcagaagagaacaaggagaacgttgatgcgagcaaagac
aaagaaaatgaggctgggaagaagaaagtggaacatgaaatctcggaaggaaacgtagct
acagctgcagctgctgcccttgcctcagctgccaccaaagcaaagcacctagcagcagtg
gaagaaagaaagatcaagtccctggtcgcccttttggtggaaacgcagatgaagaagctg
gagataaaacttcgccattttgaggagttggaaactattatggacagagagaaggaggcg
ttagagcagcagagacaacagttgctaacagaacgccagaattttcacatggaacagctg
aaatatgctgaattaagggctcgtcagcaaatggagcagcagcacagtcaaaacccacag
cagcctcaccagcactccggtgggcctgggatgaacccccttggggcaccagcacatcca
ggcttactgcctcatcagcagcccccaccataccctatgatgcaccaccaaatgccacca
cctcacccaccacagccaggtcagatgccagggcccagttcgatgatacccgggcagccc
atgccaggccggatgatgccaagtgtggcagccaacatccatccagctggcagtggtccc
cccccacctggcatgtcaccaatgacaggaaatctaattggacctcgtgttcctcttgca
gctccgaatggcatgtatcctcctccagcacagccgcctccaccagcagaaggggtgact
ccacctccagcaggagccccgccggcctcagctgctccctaa
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integrated database retrieval system
