Strigops habroptila (Kakapo): 115611090
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Entry
115611090 CDS
T08851
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shab03000
]
115611090 (RC3H1)
04121 Ubiquitin system [BR:
shab04121
]
115611090 (RC3H1)
Transcription factors [BR:
shab03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115611090 (RC3H1)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115611090 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
PaaA_PaaC
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
115611090
NCBI-ProteinID:
XP_030349319
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Position
8:complement(39695348..39761836)
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AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETALKPGKIDHLSSSAPGSPPDML
ESVPKSSISALPVNPHPVPARAPDMPSVSVTKQLQVVPRGSQLYNTQQADVFYQDPRGTA
PPFEPAPYQQGVYYPTQSMSRFVRPPPSVPEPGPPYLDHYPPYLQDRVVSPQYTQPQQYP
PMGQPIYPPHYDSRRVYPPVQPYQREEIVRGSPVPIEIPQAAVPSYIPESRDRYQQTEGY
CPVTPHLGQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSEE
NQIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMAN
VDSKAMRDQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPIQAMAVQ
GATTKSIISDYSPYGTPGGWGGSPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAER
EQQLRMELQQVDHQISQQTQMRGLEAVSNRLLLQRETTTLAGQPQPPPPPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMESQSSLDIKNKLGTTKQTENGQLDPQSKVPAEDLALTF
SSDVPNGSALTQENIGLLSNKTASLSLSEDPEGGGDNHDSQRVGVTPTSAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacaatccggaagcccatcagcttgggttgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgcccttttgaccagaccactatcaatacagac
attgaactccttcctgtgaactcggccttgctgcaactagtgggtgctcaggttcctgag
cagcagccaattactttatgtagtggagctgaagataccaagcattatgaggagggcaag
aaatgtgtggaagaactggcattgtacctcaaaccactcagcagcgcaagaggtgtgggt
cttaacagtactactcagagtgtgctaagtcgtcccatgcaaaggaaacttgtgacatta
gttcattgccagctggtggaggaagaagggcgaatcagagccatgcgtgcagcacggtcg
cttggtgaaagaacagtcacagagcttattcttcagcatcaaaatcctcagcagctctct
tccaacctctgggctgcagtgagagccagagggtgccagttccttggaccagcaatgcaa
gaggaggctttaaagctggttctcctggctctggaagatggatctgctttgtcacggaag
gtcttggttctctttgtagttcagaggctggagccacgatttcctcaggcttctaaaact
agcattggacatgttgtccagcttctttacagagcctcatgcttcaaggtgacaaaacgg
gatgaagattcctccctgatgcaactgaaggaggaatttcggacttacgaagctctgaga
agggaacatgattcccagatagttcaaatagctatggaagcaggtttacgcattgcacca
gatcagtggtcctcactgttatatggagaccagtctcacaaatcccacatgcagtctatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaggaattaactattgct
cttcagaggactggagatccagctaacctgaatcgccttcgaccccacttagagctccta
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggacagtggttcatggcttagttgattatattcagaatcacagcaag
aaaggaacagatcagcaacagcctcctcagcacagcaagtacaagacatacatgtgcaga
gacatgaaacagagaggaggatgcccccggggggccagctgcacctttgcacattcacag
gaggagctagaaaaattccgtaaaatgaacaagcgtttggttcccagaagacccctgagt
gcatccctgggccagctaaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggatttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacagtgacacaacttatttctcgagggactgactccggttatgaaacagctctg
aagccagggaagattgaccatctgagtagcagtgcccctggatctcctcctgacatgctg
gaatctgttcccaagagctctatttctgccttaccagtgaaccctcatcctgtgcctgct
cgggcaccagatatgccttcggtttcagtcaccaagcagttgcaagtggtaccacgaggg
tctcagttgtataatactcagcaagcagatgtgttttatcaagatcctagaggaactgcc
ccaccatttgagccagcaccttaccaacaaggagtttactatcccactcagtccatgtct
cgctttgtccgacctcctccatcagttcctgaacctggcccaccttatttagaccattac
ccaccctaccttcaggatcgtgtggtgagcccacagtacacgcaaccgcagcagtatcct
cctatgggacaacccatatacccacctcactacgacagtcgtcgtgtatatccccctgtc
cagccatatcagcgagaggagattgtccgaggaagccctgtacccattgaaattccacaa
gcagctgtaccctcctacatacctgaatccagagacagataccaacaaacagagggttat
tgcccagtgactccacatcttggtcaaatcaggccttcatgccacaggcctcatcccagc
ctggatgaacttcatcggcgaaggaaagagatcatggcccagctagaagagaggaaggtg
atttctccacctccttttgcaccgtcaccaaccttgcctcatccttttcattcagaggag
aaccagatttttgtttttgtgcagtacttggatgaagacctgaaggtagctgggaaatac
aaaggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcaaggagtgtggagatggcgaac
gtagacagtaaagccatgcgtgaccagcgattagacatgcaacgaagagcagcagagact
ggtgatgatgacctcattccatttggagaccgaccaactgtgtcgagatttggggctatc
tctcgtacttccaaagccatgtatcagaattctggtcccatccaggccatggcggttcag
ggagctaccaccaaatcgatcatttcagactacagtccttatggaactcctggtggctgg
ggaggctctccatattctcctcatcaaaatataccttctcagggacgtttcaatgacagg
gagagactgtccatgtcagatgtggctggtcatgggaaacagttgccctcagctgaacga
gagcagcagctgcgcatggagctgcagcaagtagaccatcagattagccagcagacacaa
atgcgaggactagaggctgttagtaacaggctgctgttgcagagggagacgactaccctg
gcaggccaaccacagcccccaccgccacctcccaagtggcctgggatgatctcaagtgaa
cagctgagcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctg
agcatggagagccagtcttcactggatataaaaaacaaactgggcactactaaacagaca
gaaaatggacaattagatccgcaaagcaaggttccagctgaggaccttgcactgacattc
agcagtgatgttccaaatggatcagctttgactcaagagaacattggcctcctgtcaaac
aagacagcatctctcagcctgtcggaggacccagagggaggaggagacaaccatgactcc
cagagagtgggagttacacccacatctgctccatga
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