Strigops habroptila (Kakapo): 115611159
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Entry
115611159 CDS
T08851
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115611159 (HFM1)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115611159 (HFM1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115611159 (HFM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
115611159
NCBI-ProteinID:
XP_030349466
LinkDB
All DBs
Position
8:complement(4637126..4672964)
Genome browser
AA seq
1441 aa
AA seq
DB search
MFNSANMVFSLDNLFFERPDTKQRYLENEEPKVWCIAPAPSISEIPAAEELQRELEKTTA
NAHMGGRKHQKFIQQCKSTSEEGNDKSPAPVQFGIASEKEVLQLSVGEREKISFCHEGLK
MVSLFLSSDENKSKMGTGLSHPPGANFSQNKIEGNFPENSDDDESAHSMLRKSLFKMSGY
MHKNTELEDSPIDVKGIGTYLNTIENMKEVKKGLWRNNHHAPIAEVSDFILHRVNDENIA
SKNGINMKSFSNASEILDMTGTAGRKLEILRAVTEIPTQFRSIFKEFPYFNYAQSKALDD
LLYTDRNFVICAPTGSGKTVMFELAITRLLMEAPLPWLNIKVVYMAPIKALCSQRFDDWK
EKFGPLGLSCKELTGDTLMDDLFEVHHADIIITTPEKWDSMTRRWRDNSIVQLVRLFLID
EVHVIKDESRGATLEVVVSRMKTVQSSLWHLLENRDTVPPLRFVAVSATIPNAEDIAEWL
SDSKMPAVCLKIDEDQRPVKLRKIVLGFPCSDNQTEFKFDLTLNYKIASIIQAYSEQKPA
LVFCATRKGVQQAASVLAKDAKFLLSVEQKQRLQRSANSLKDSKLRDLLMYGVAYHHAGM
EVSDRKIIEGAFTAGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYVGGVFQEYSETDILQ
MIGRAGRPQFDTTATAVIMTRWSTREKYMQMLNGADIIESSLHSHLVEHLNAEIALHTVT
DVTVALQWIRSTFLYIRALKNPTHYGFSSGLDKIGIEAKLQELCLKNLNDLSSFDLIRMD
EENNFKPTETGRLMAWYYIAFDTVKQFFTIKGTETLNELITMISNCTEFLDVKLRTNEKK
ILNTLNKDKDKITIRFPMEGKIKTREMKINCLIQAQLGCIPIQDFTLTQDTGRIFRNGLR
VTRWLTDFLASCKDNFSALLNSLILAKCFRCRLWENSLHVSKQLEKIGVSLSNAMVNAGL
TSFKKIEEINARELELILNRHPPFGNQIKESVLHLPKYELDIEQLPKYSDTLAEILVTIR
LTNYEQLQTKRTATDFHYVTLVIGDADNQVIFNQKIMDSVLLRTGDWTKKIEVKRALKSE
EISINLISSDYVGLDIQQAYTAFYLTPKPVGSKVVTNQNPKVESSLDTCYGSPQSLSAAK
VDTGGRSKQEITYKKYGNRECNHRCKNKDVCGHDCCKIGVLPKSEMNGDSKFSSYLADLR
SRNSVSSVPPVKRLKMQMLNQTQTVDLKQFGFTPKSSLPAFQRSGSEQSSSLPSADQADD
VNSLGVSQKQLQSWNYGRSNALDVDFELRDDVWDDIDDEKLVFASNFDSRDLDEYEPLGQ
YTRSKATNDISKDSCTLQDQSSVQNSFFSLVNSPSNVNLSAQHGNTNMFSFQEKNCLNLS
QELKTTQCSCISKKISDSSKFTRKEDFFIFTEQEKEADPRYLLDDEINDVKPFLGIFDGI
L
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgttcaactctgcaaacatggtcttttcattggataatttattttttgaaagaccagat
acaaaacaaaggtatctagaaaatgaagagcctaaggtttggtgtattgcacctgctcca
tctatttctgaaattccagctgcagaggagttgcagagggaactggaaaaaaccacagcc
aatgctcatatgggagggagaaagcaccagaagtttatacaacaatgtaagagtacctct
gaggaaggaaatgataaatcaccagcaccagttcagtttggcatagcctctgaaaaagaa
gtgctccaattaagtgtaggagaaagagagaaaattagtttttgtcatgaaggtctgaaa
atggtttcattgtttctctcttctgatgaaaataagtctaaaatgggaacagggctttct
catccacctggtgcaaatttttcacaaaacaaaatagaaggtaattttccagaaaacagt
gatgatgatgagagtgcccattcaatgttaagaaaaagtttattcaaaatgtctggttat
atgcacaaaaatacagaattggaagatagtcctattgatgtgaaaggaattggtacttac
ttaaatacaattgaaaacatgaaagaagtgaaaaaaggtttatggaggaataatcatcat
gctccgatagccgaagtctcagattttattctgcatagagtaaatgatgagaacattgca
tctaaaaatggaattaatatgaaatcattttctaatgcttcagagattctggatatgaca
ggaactgcaggaagaaaattggaaattttgagggctgttacagaaataccaacacaattt
aggagtatttttaaggagttcccatattttaactatgcgcagtctaaagctttggatgat
cttctttatacagacaggaactttgtgatttgtgctccgactggctccggaaagactgta
atgttcgagctagctattaccagattactcatggaagccccactgccttggctaaatatt
aaggttgtttacatggctccaataaaagctctgtgcagtcagcgttttgatgattggaaa
gaaaaatttggacctctaggactcagctgcaaggaactgacaggagatacattgatggat
gacttatttgaagtacatcacgctgacattattatcactacacctgaaaaatgggatagc
atgactagaaggtggagagacaactctatagtccagcttgtacgactgtttctcattgat
gaggtgcatgttataaaggatgaaagccgtggtgcaacgttagaagttgtagtcagtcgg
atgaagactgttcagtcttctctttggcatcttttagagaatcgtgacactgttcctccc
ttgagatttgtagctgtttctgcaacaatcccaaacgctgaagatattgcagaatggctt
tcagatagtaagatgccagctgtatgtctgaaaatagatgaggatcaacgaccagtgaag
ctacgcaaaattgttcttggttttccatgcagtgacaatcagacagaattcaaatttgac
ttaactcttaactacaaaatagctagtattatacaagcatactcggaacaaaaaccagca
cttgtgttctgtgccacaagaaaaggagtgcagcaggctgcttctgttcttgcaaaagat
gctaagtttctactgagtgtagaacagaaacaaaggttacagaggtctgcaaattcactg
aaagactccaaactgagagatcttttaatgtatggtgtggcttatcatcatgcgggtatg
gaggtatctgacagaaaaataatcgaaggagcctttactgcaggagacttaccagtactt
tttactactagcaccttagcaatgggagtcaatctacctgcacatctggtggttataaaa
tccacaatgcactatgttggaggagtgttccaagagtacagtgaaactgatattctgcaa
atgattgggagagcaggaaggcctcaatttgacactacagctacagcagttattatgact
cgttggagcacaagggaaaagtatatgcagatgttaaatggtgctgatataatagagagc
agcttgcacagtcatcttgttgagcacttgaatgcagaaatagcgctgcatactgtcaca
gatgtcactgtagctttgcagtggatacgatcaacgttcttgtacatcagagccttaaaa
aatccaactcattacggtttttcatctggattggataaaattggaattgaagcaaaatta
caagaactgtgtttgaagaacttaaatgatttatcatcttttgatttgatcaggatggat
gaagaaaataatttcaaaccaacagagactggaagattaatggcatggtattatattgca
tttgatacagtgaaacaatttttcacaattaagggaacagagactttaaacgaattgatt
accatgatctccaactgcacagaatttctggatgttaagttaagaactaatgagaagaaa
atactgaacactttgaataaagacaaggacaaaataactatcaggtttccaatggagggg
aagataaaaacaagagaaatgaaaataaactgtcttattcaggctcagctaggatgcatt
cctattcaagactttactttgacacaagatactggcagaatatttagaaatggcttaaga
gtcactagatggttaactgactttctggcatcatgtaaggacaacttttctgccttatta
aactctttgattttagcaaagtgtttcaggtgcagactttgggaaaattcccttcatgtg
tctaaacaactggaaaaaattggtgtatcactgtcaaacgctatggtaaatgctgggctg
acatcatttaaaaaaatagaagaaataaatgcaagggaacttgaactgattttaaacaga
catcctccttttggaaaccagataaaagaatctgttttgcaccttcccaaatatgaactc
gacattgaacagcttccaaaatacagtgatacattggctgaaatcttggtaaccattaga
ttaacaaactatgagcagctacagacaaagagaacagcgacagactttcactatgttaca
ctggttataggagacgctgacaaccaagtcatttttaatcagaaaattatggattctgtg
ctgctgagaactggcgattggacaaagaaaattgaagtgaaaagagctcttaaatcagag
gaaataagtataaatttaattagttctgattatgttggccttgatatacagcaagcatat
acagccttttacttaacaccaaaaccagtgggaagtaaagtggttacgaatcaaaaccca
aaagttgagtcttcacttgatacgtgttatggctcaccacaaagtctgtcagcagcaaaa
gtagatacaggaggcagatctaaacaagagattacttacaagaaatatggaaacagagaa
tgcaaccatcgctgtaaaaataaagacgtgtgtggacatgactgctgtaaaattggagta
cttccaaagtctgagatgaatggagattcaaagttttcttcgtacctagctgatttaagg
agcaggaactcagtttcatctgtacccccagtaaaacggttaaagatgcagatgttaaat
caaactcaaactgtggatctcaagcaatttggttttacacctaaatcttcgctgccagca
ttccaaaggtctggcagtgaacagtcatcttcattaccttcagcggaccaggcagatgat
gttaacagcttaggggtatctcagaaacaactgcaatcctggaactatgggagaagtaat
gctttggatgtggattttgaactgcgggatgatgtttgggatgatatcgatgatgagaaa
ttagtatttgctagcaactttgacagtagagatttagatgaatatgaaccacttggccag
tatacaagaagcaaagccacaaatgacatttcaaaagattcatgcacgttacaagatcag
agcagtgttcagaattcgtttttttctctggttaatagtccatcaaatgtgaatttatct
gcacagcatggaaatacaaatatgttcagttttcaagagaaaaactgtttaaatctttca
caagagctgaaaactacacaatgttcttgcatctcaaaaaagatctcagactcttctaaa
ttcactaggaaagaagatttctttattttcacagaacaagaaaaggaagcagatcccaga
taccttcttgatgatgaaatcaatgatgtcaagccctttcttggaatatttgatggcatt
ttgtaa
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