Strigops habroptila (Kakapo): 115611367
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Entry
115611367 CDS
T08851
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115611367 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115611367 (VPS8)
Membrane trafficking [BR:
shab04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115611367 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
zf-RING_Vps41
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
Clathrin
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR5
Beta-prop_HPS5
WDR55
ANAPC4_WD40
Beta-prop_WDR3_1st
DUF5770
Motif
Other DBs
NCBI-GeneID:
115611367
NCBI-ProteinID:
XP_030350025
LinkDB
All DBs
Position
8:10454512..10533758
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AA seq
1399 aa
AA seq
DB search
MDAAPEQGACPAGAEPEPCPEPPVHRLSVAELDRELDCRSELIDDKEFDIPQVDTPPTLE
SILNETDDEEESFILEDPFLLNIDNTDTHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLH
GSVIRLSLLKGISAQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFGKDQNQALRLC
LGSTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILH
IKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRD
HPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNSVNPML
AFCRGDVVHFLLVKRDDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDR
QTQEELETIEISEVQLVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGT
KSVHVMTLRSWRERVDHLLKQERLTDALALAWSFYEGKAKAVVGLSGDTSKRKAIIADRM
VEILLHYADRTLKKCPDQGKIQVMEQHFQDVVPVIVDYCLLLQRTDLLFNQIYDKMSENS
VAKGIFLECLEPYILSDKLMGITPQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQV
VLLCWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLNAGKSLTDEQVVMGNKLLVYI
SCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEGSVDEEVYPYVRTLLHFDTREFL
NVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTL
FVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQIC
EFMYERELRYDKIIDCYLRDPVRKEEVFNYIHNILSMPGYSTEEKQSVWQKALEHIEELL
LLSPCKAADLVAIHFSEQIETIITNLQDQFLLFQFLRSLLDPREGINQDLIHLPPSISEQ
FIELLCQYSPGQVLETLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLE
RLQSKLLMLTQDDESSAELTLLENIEDTLMKTIALCQRNSHNLDQQQREALWFPLLEAMM
SPQKLSGSSQCRYSESLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVL
GMLDTFNYEQTLLETTTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETA
DEIIVFSCGHLYHSLCLLSKECGTVTKGQMRWMCYKCNSSNKGGKLSENFSELKKGSGAP
LAQTSSESLLDPQQIQAFDQLCRLNRGTSRLALLTELSRGHSSEKHGLLSVSHGDPTTSS
VFQNENFQLHLAPPPQAED
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggcgccggagcagggcgcctgccccgcgggagcggagcccgagccgtgcccg
gagccgcctgtgcatcggctgagcgtggcggagctcgaccgcgagctggactgccgcagc
gagctgatcgatgacaaagaattcgacattcctcaagttgatacccctccaacactggag
agcatcttaaatgagactgatgatgaagaagagtctttcattttggaggatccctttctc
ttgaacattgataacacagatacacactcctatgacacatcttctgtagcaagctctgac
agtggggaccggacacacctgaaaaggaagaaaaagctcccagattctctctcactccac
ggatcagttatacggctctcacttctgaagggaatttctgcccaaatagtatctgcagca
gacaaagtggatgctggcttgcccactgcaattgcagcatcaaatctgatcgcagtgggg
acttcccatgggttagcactcatctttggaaaagatcaaaaccaggctcttcggctgtgt
ctgggcagcactgctgttggggcccagtatggggctatctctgctctcagtatcaacaac
gactgttcgaggctcctgtgtggctttgcaaaaggacagatcacaatgtgggatctggcc
agtgggaagcttctacgatcaataacagatgcgcaccccccagggacagccattttgcac
atcaagtttacagatgacccaacgcttgcaatttgcaatgacagcggaggctccgtattt
gaactgtcatttaagagggttatgggagtgagaacgtgtgaatctcgatgtctcttcagt
ggctcgaagggggaagtttgctgtattgaaccattacacgcaaaagttgagctgagagac
catcctatcacccaatattcactgctggccatggcctccctgacaaagatactggttatt
ggcctgaaaccatctctgaaagtgtggatgacctttccctatggtcgtatggacccttct
agtgtccctcttttggcgtggcactttgtggctgtacagaactctgtgaaccccatgctt
gcattttgtcgaggagacgtcgttcactttcttctggtgaagagagatgataccggtgca
atacatgtcacaaagcagaggcagcttcatctacactacgacctcatcaactttacttgg
ataaactcacggacagcagtgcttctggacagtgtggagaagctgcatgttatagatcgt
cagacccaggaggagctggagaccatcgagatctcagaagtccagctagtatacaacagc
agccacttcaaatccctggctacgggaggcaatgtcagtgaagccctggcactggttgga
gagaaagcttgttaccagtccatcagcagctgcggtggtcagatcttttatcttggaact
aagtctgttcacgtcatgacattgagaagctggagagagagagttgaccaccttctgaaa
caagagcgtctcactgatgccctggctctagcttggtctttttatgaaggtaaagcaaag
gctgtagtaggcttgtctggggacacaagcaagcggaaagcaatcattgcagacaggatg
gttgaaatcctcctccattatgctgatcggactttgaagaaatgtcctgaccaaggaaaa
atccaggttatggagcaacattttcaggacgtggtgcctgtcatagttgattactgcctc
ttgctccagcgcacggatttattatttaaccagatatatgataagatgagtgagaattct
gtagctaaaggcatctttctggagtgcttggagccatatatcttaagtgataagctcatg
ggaatcacacctcaagtgatgaaagacttgctgcttcacttccaagacaagaacaggctg
gaaaatttggaagcctgcattgtgcatatggatatcaccagcttggacatacagcaggta
gttcttctatgctgggaaaaccatctctatgatgccatgatctatgtctacaacagtggg
atgaatgacttcattagtcccatggagaagctgttcaaagtcattgctcctccactgaat
gctgggaagtctctcacagatgagcaagtggtaatgggcaacaagctgcttgtatatata
agctgctgcttggcaggccgtgcatatccattgggtgatattcctgaagatctggtacct
ttggttaaaaatcaggtctttgaatttctcatccggctgcattcaactgagggatctgtg
gatgaggaggtctacccttatgttcgtaccttgctgcatttcgacactcgagaattcctt
aacgttcttgctctgacttttgaagactttaagaatgacaagcaagctgtggaatatcaa
cagagaattgtggacatacttctgaaagtcatggtggagaattctgacttcaccccatcg
caagttggctgtctctttaccttccttgcccgtcagcttgccaagcccaacaacacactg
tttgtgaacaggacactttttgaccaggtccttgaatttctgtgcagcccagatgatgac
tcccgccattcagagaggcagcaggtccttttagagttgctccaggcaggagggatcgta
cagtttgaagagagccgtcttatccaaatggcagaaaaagctgaattctatcagatttgt
gagttcatgtatgaacgagagcttcgctatgacaaaataattgactgttacctgcgtgat
ccagtgagaaaagaagaagttttcaactatattcacaacatcctgtccatgcctggctac
agcactgaagaaaagcagtcagtgtggcagaaagctttggaacatatagaggaattactg
ttgctgagcccatgtaaagcagctgatttggtagccattcacttcagtgagcagattgag
accatcattacaaaccttcaggaccagttcttactcttccagtttctgaggagtctcctt
gatccaagagaaggtattaaccaagacctgatacacttaccacccagcatcagtgagcag
ttcattgagctgttgtgtcagtacagcccaggccaggttttggagacacttaaagttctg
gaatactgcagactggaagaaaccatccagataacccagaaacatcagctccatgaagct
tcttcttatttactggagaagaagggagatatccatggtgcctttttggttatgcttgag
cgattgcagagcaagttgctgatgcttacacaagatgatgaaagctcagctgaactcacc
ttgctagaaaacattgaagataccttaatgaaaacaattgccctttgccagagaaattct
cacaatttagaccagcaacagcgagaggccctttggtttcccctgctggaggctatgatg
tccccacagaaattatctggttcttcacagtgtcgttactccgaatctttgaagagtttg
acaatgcaagtgctgaacaacatggctgcatttatcgctcttccttcaattctgcagaga
attctacaggatccagtttatggaaaagggaaacttggagaaattcaaggacttgtcctg
ggaatgctggacacttttaactatgaacaaacccttttagagacaactacgaatcttcta
aaccatgatctccactggtcgctgtgtaacctaagagcttctgtcactagagggcttacc
ccaaagcaggattactgctgcatttgtctacagcagtacaaaagaaggcaagaaaccgcc
gatgaaatcattgttttcagctgtggccacttgtaccattcgctgtgtctgctgagtaaa
gagtgtgggacagtaactaaaggccagatgaggtggatgtgctataagtgcaactcaagt
aacaagggaggaaaactgagcgagaacttctcagagctaaaaaaaggaagtggagcaccc
ttggcacagacaagctcagagtctctgttggatcctcagcaaatccaagcttttgaccag
ctctgccgactcaaccgaggaacctccagactggctctcctgacagagctgtcccgtggc
cacagcagtgagaagcacgggctgctcagcgtttcccacggtgacccaaccaccagcagc
gtcttccagaacgagaacttccagctccatctggccccccctccacaggccgaagactaa
DBGET
integrated database retrieval system
