Strigops habroptila (Kakapo): 115611755
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Entry
115611755 CDS
T08851
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04510
Focal adhesion
shab04512
ECM-receptor interaction
shab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115611755 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115611755 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115611755 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shab04147
]
115611755 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115611755 (COL4A4)
Exosome [BR:
shab04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115611755 (COL4A4)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115611755 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115611755
NCBI-ProteinID:
XP_030351005
LinkDB
All DBs
Position
8:complement(19445608..19518833)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFERIKWLIAAAWWLLMVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGPLGSTGPAGLPGEKGQRGETGQPGPAGERGDKGPTGVPGFPGLDGIPGL
PGSGGPRGKPGLDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVYISHFGKGPP
GDRGDPGPPGMPGPIGSRGTTGPSGYPGQPGFPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGVTGHRGPRGPKGILGRGEKGEKGIPGF
PGLRGDPGSYGPAGSPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVETPLVPIK
GPQGDPGFPGPAGDTGSVGPIGPAGLLGRPGHDGTSLPGLPGVSGAPGPQGFQGDPGSPG
TGESIPGRAGFPGPPGLPGQPGRQGLPGPPSVICTDRGIPGEPGTKGQMGLPGRKGEKGE
KGNQGLCSCRAGPPGPRGVQGPPGTQGKKGHMGYPGRDGEKGDPGLSGAMGSPGFPGTPG
SPGQHGEKGEKGDPGRVRIKGTKGERGPTGVPGYPGQRGNDGRDGELGLPGEKGAEGDSG
VPLPGDKGFPGVPGLPGVKGQMGLPGLGFPGPPGVRGSHGDFGDPGNIGPPGPKGQKGET
VCITLPYPGNPGPPGFKGIQGPKGLKGLPGHPGPNGFDGQKGHRGRPGAGIPGPEGFRGK
AGDPGDEGERGSTVDGKNGPPGPRGIDGQKGVAGDTTYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPPCDAGLPGPPGLGGVMGLPG
PQGLPGFKGQRGDRGLTGPPGIKGLKGSPGSQGPPGPPGSRGLPGLPGNKGPPGFPGQTG
SKGIQGPQGFPGLPGTQGPMGISGVKGEEGEMGPPGPSGECGDMGIKGERGPPGDSGCVN
IHLEKGQKGEPGFPGENGFRGERGEKGNTGFRGTPGFPGKNGVPGLPGDHGDTGLMGFPG
SQGFPGPKGFKGIMGFQGQPGDQGDLGLPGIPGNPGLTGPKGSKGKRGDPTPLLGTHGPK
GPPGDPGLPGLCGFPGEKGSPGIQGQPGTPGSKGDPGHPGIPGLPGATGPQGLPGKPGEK
GKHGILGPPGLQGLAGSQGRKGLPGLPGLDGLDGPKGQKGSVGAPGQSETGPPGYSGELG
PKGQRGEPGWPGISIPGPPGERGFPGFPGRRGPVGPTGPMGRSPDSASPGPPGDQGPPGL
DGIRGLPGNPGPPGETTFVRGDPGDIGLRGAPGNPGQRGRQGARGLPGNQGRAGLKGPMG
SHGPQGPPGATGQPGDEGFQGKPGPRGPTGFIGDPGEPGKTDDSCPTIPGPPGEAGQRGD
DGSVGLPGPIGHPGPPGEKGEEGSCGLPGRDGLPGVPGPPGDQGHIGQQGCAGPRGPPGQ
TGIPGPPGPHIRSASGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQLCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPVNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVVPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaacggattaagtggcttatcgcagctgcctggtgg
ctgctgatggttttttcagcacaagaaattgatgggggaggatatgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagctgggagctcaaggtccgattgggcccttgggatctacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagactgggcaacctgggccagctggagaaaga
ggtgataagggcccaactggcgtcccaggatttcctggtttagatggcattcctggatta
ccaggaagtggaggacccaggggcaagcctggtttagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggttatattggaccacgtggtccttacggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtacatttcacattttggaaaaggacctcca
ggagacagaggcgatcctggaccccctggcatgcccggacctatagggtcaagaggtact
acgggcccatctggatacccaggccaaccaggctttcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtggatggacaaaagggggagccgggt
gacattggacttcctgggccacctgggtcaccactgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctggggtaacaggacacagagggcca
cgtggacccaaaggtatacttgggagaggagaaaagggtgaaaaaggcattcctgggttc
cctggattgcggggtgatcctggctcttatggacctgcaggttctcctggaatgaagggg
gaaacaggatttgctgggtttcctggacaacctggctacccaggcatacagggggatcca
ggagaaaaaggccccccaggtcctcccggagctgttgaaactccactggttcctataaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatacagggtcagttggacca
attgggcctgcaggcctgctgggaagaccaggacatgatggaacaagtctgcctggcctg
ccgggagtaagtggggcaccaggacctcagggttttcaaggtgaccctggttctcctgga
acaggtgaatcaatcccaggaagagctggatttccgggaccaccaggcctaccaggacag
ccaggaagacaaggcttacctggaccacccagtgtaatctgtactgacagagggatccct
ggagaacctggaacaaaaggtcagatgggccttccaggaagaaaaggggaaaaaggagaa
aagggaaatcaaggcctctgctcatgtagagctggtcctcctggtccacgtggtgtgcaa
ggacctccaggtactcaaggaaagaaaggacatatgggataccctggaagagatggagaa
aagggtgacccaggcttatctggtgcaatggggtcaccagggttccctgggacacctggt
tctcctggacaacatggtgaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggaacaaagggtgaaagaggtcctactggggttccaggatatccaggtcaaagaggtaat
gatggcagagacggggaactaggattgcctggggaaaaaggagctgagggtgattctgga
gtaccactaccaggtgataaaggattccctggggtcccaggccttcctggggtgaaagga
caaatgggattgcctgggttggggtttcctggccctccaggagtcagaggcagccatgga
gactttggtgatcctggtaatattgggccacctggtccaaagggccagaaaggtgagact
gtctgcattacattaccataccctggaaatccaggtcccccaggttttaaaggcattcaa
ggaccaaagggtttaaaaggactccctggtcatcctggaccaaatggctttgatgggcaa
aaaggccatcgaggcaggccaggagcaggaatccctgggccagaaggctttcgaggcaaa
gctggtgatcctggtgatgaaggtgaaagaggatctacagttgatggtaaaaatggccct
ccaggtccacgtggcatagatggtcagaaaggtgttgcgggtgataccacatatggtccc
ccaggaatcccaggcaacaggggactgccaggaccccctggtgcacaaggagcaaggggt
gatccaggcattcctggacttcaagggcagcctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggagatataggagcaccaggttgtccaggcttccctggtcca
ccatgtgacgcgggcttaccaggaccaccaggacttggaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcagaggggagacaggggcctaacagggccacct
ggaatcaaaggtctcaaaggctctcctggctcacaaggtcccccaggtcctccaggttcc
cgaggacttccaggacttccaggcaataaaggaccacctggtttcccaggacaaacagga
agcaaagggattcaaggaccccaaggattcccaggactcccaggaacacaaggcccaatg
ggaatctctggtgttaaaggagaagaaggagaaatgggtccacctggacctagtggagaa
tgtggggatatgggaataaaaggtgaaagagggcctccaggagacagtggctgtgttaac
atccatcttgagaaaggacaaaagggggaaccagggtttcctggtgagaacggatttaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcaccccaggatttccagggaag
aatggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
tcacagggtttcccaggaccaaagggctttaaaggaattatgggttttcaaggacaacca
ggtgaccagggtgaccttggcttaccaggaatccctggcaatccaggactgactggccca
aaaggatccaaaggcaagagaggtgaccccactccgctgcttggtacacatggtccaaaa
gggcctcccggagatccaggattaccaggtctctgtggattcccaggagagaagggttca
ccaggtatccaagggcaaccgggaacaccaggatccaagggtgaccctggacacccagga
atacctggacttccaggagctacaggtcctcagggattgccaggaaaacctggagaaaaa
gggaaacatggaattttgggacctccgggactgcagggattagctggatcccaaggcaga
aaaggtcttcctggactgcccggactggatggcttggatggaccaaaaggccaaaaaggt
tctgtaggagctccaggtcaaagtgaaacagggcccccaggatattcaggagaacttgga
ccaaaaggacagagaggtgaacctggatggcctggtatttccattccaggccctcctgga
gaaagaggattcccaggatttccaggtagaagaggacctgttggacccactggacctatg
ggaagatctcctgatagtgcttctcctggtcctccaggtgatcaaggaccacctggttta
gatggcatcagaggtctgcctgggaatcctggtcctcctggagagactacctttgtgcga
ggagatccaggtgatatcggtcttcgaggggcaccaggtaatcctggacaacgagggcga
caaggagccagaggtcttccagggaaccaaggaagagcaggcctaaagggtcctatggga
agccatggcccacaaggtccacctggtgctacaggacaaccaggagatgaaggttttcaa
ggaaaacctggtcccagaggtcccacaggtttcataggtgaccctggtgaaccaggaaaa
acagatgattcatgccctacaatcccagggcctcctggggaagcagggcaaagaggagat
gatggctctgtgggattaccagggccaataggccatcctggacctccaggagaaaaaggt
gaagaagggtcatgtggcctgccaggtcgagatggcttacctggggtacctggaccacca
ggtgaccaagggcatataggacagcaaggatgtgctgggccgcgaggtccacctggccag
actggtatcccagggccaccaggcccccatattagatctgcaagtggatttttactcgtc
cttcacagccagtcagacagagaaccactctgtccacaagggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagaaaaagctcataatcaagatcttggtctg
gcaggatcttgtcttcctgtgtttaataccatgccatttgcttactgtaatatcaaccaa
ctttgttactatgccagtcgaaacgataagtcttactggttgtcgagtgctgctccttta
ccaatgacaccactctctgaagaagaaatacaaccatatataagcagatgtgctgtatgt
gaggccccagcccaagcagtagcagttcacagccaagatcagtcaattcctccctgcccg
gtgaactggaggagtctttggataggatattcctttttgatgcacactggatctggtgat
cagggtggtggacagtcccttatgtcacctggaagttgcctagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacatgccaattttttgctaatgaatacagt
ttctggttaacaactgtggtacctgaattgcagtttgcatcagctcccctatcaggaact
cttaaagaaggacaagagcagaggaaaaaaatcagtagatgccaagtatgcctgaagcat
ggctaa
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integrated database retrieval system
