Strigops habroptila (Kakapo): 115611953
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Entry
115611953 CDS
T08851
Symbol
VCAM1
Name
(RefSeq) LOW QUALITY PROTEIN: vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115611953 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shab04515
]
115611953 (VCAM1)
04090 CD molecules [BR:
shab04090
]
115611953 (VCAM1)
04091 Lectins [BR:
shab04091
]
115611953 (VCAM1)
Cell adhesion molecules [BR:
shab04515
]
Immunoglobulin superfamily
VCAM
115611953 (VCAM1)
CD molecules [BR:
shab04090
]
Proteins
115611953 (VCAM1)
Lectins [BR:
shab04091
]
I-type lectins (Siglecs)
115611953 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set
ICAM_N
Ig_6
Receptor_2B4
DUF2808
Ig_4
C1-set
ICAM1_3_5_D2
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
115611953
NCBI-ProteinID:
XP_030351552
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All DBs
Position
8:952455..967713
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AA seq
630 aa
AA seq
DB search
MLKEMGRTSQAVLVILYVFTTVKAFEMEIIPANRIVKQIGETLRLTCNTTGCASPSFSWR
TQMDNPLGGTVNNYRTYSTLTMNPVSIVNSHDYLCTVFCGEKEKKEKSVKVELYSFPRDP
VIEISPSLVAAEPVTVICKIPDVYPSHYLEVLLKKEEHVLHEENFYEDDSTNAENKTVRY
SFNPTAEDIGKEITCVAKLPIPNMDFEPKERVTSEKLTANFGPQNTVITASPGNWPMEGD
TLNLTCVTESNPPAQTVWRKHLADESIQLLTTNNVLSIPDAHFTDSGLYICEVTNLVTNK
TEKATVDIVIQGAPDITELSIEPSTTVQEGENVSIRCSAEGNPSPRIILRRKPDGADLGP
YSEGRILLPSVTFLNGGDYECVAENKFGKSRSEITLNVEYGPKNTMISVIPATAVKEGET
VIMKCTSSGNPAPVISWKKKKTTGEPEKIYTDATLTIQNIKSQDLGLYECEAYNQFGKEE
KDVKLLVQVPPQNITVLVYPSENVKEGENTTITCSTYSNLPSEMVLKKVHQEKEIILPSV
NRNFILYKVTKNDRGRYLLDVFNEVGNNITVIEIAVVERLEKLDQMIPLIIAFSSVTAVA
VPAVAILIYVSRKAKINGSYSLVKALRLKV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaagagatgggaagaacaagccaagctgtgctagtaattttgtatgtgttcacg
actgttaaagcttttgaaatggagattatacctgctaacagaattgttaaacagatcgga
gaaacactcagactcacatgcaatactactggctgtgcatcaccaagtttttcctggaga
acccagatggacaacccccttggaggaacagtgaataactataggacatactctaccttg
actatgaatccagttagcattgtgaattctcatgactatctatgtactgtcttctgtggt
gagaaagagaaaaaagagaagagtgtcaaagttgaactttactcttttcccagagatcct
gtcattgagatcagcccatccttagttgctgcagaaccagtcactgtcatctgtaaaatt
cctgatgtgtatccttctcattacctggaagtactcctaaagaaagaggaacatgttctt
catgaggaaaatttttatgaagatgacagcacaaatgcagagaacaaaactgtcagatat
tcgtttaatcccacggctgaagatattgggaaagagatcacctgtgtggccaagttaccc
attcctaatatggactttgaacccaaagaaagagtaacttctgagaaactgactgcaaac
tttggcccacaaaatactgtcattactgcatctccaggcaactggccaatggaaggagac
actctaaacctcacttgtgtgactgagagtaatccaccagcacaaacagtttggagaaaa
catctggctgatgaaagcattcagcttctgacaacaaacaatgtcctctctattcctgat
gcccatttcactgattcaggactgtacatctgtgaagtgactaatctggtaacaaacaaa
acagagaaagcaactgtggacatagttatacaaggtgctccagacattacagaactctcc
attgaaccttctaccacagttcaagaaggagaaaatgtttccatacgatgttctgctgag
ggtaacccttctccaaggattattttaaggagaaaacctgacggtgcagacttggggcct
tatagtgaggggagaattctccttccatctgtgacgttcctaaatggaggagactatgaa
tgtgtagcagaaaataagtttgggaaaagtagaagtgaaataacacttaatgtggaatat
ggaccaaagaatacaatgatctctgttatccctgccactgctgttaaagaaggagaaact
gtgataatgaaatgtactagttctggcaatccggctccagtgatctcttggaagaaaaag
aagactactggggagcctgagaaaatttatacagatgcaactttaaccatacagaacata
aaaagtcaagatctggggctttatgaatgtgaagcttataaccaattcggcaaagaagaa
aaagatgtgaaattacttgttcaagttcctccccaaaatatcactgtgttagtatatcca
tcagaaaatgttaaagaaggagaaaataccactattacatgtagcacatacagtaaccta
ccatcagagatggtcctgaaaaaggtccatcaggagaaagaaattattctgccatcagtg
aacagaaactttatactctacaaagtcaccaaaaatgatagaggcagatatttgcttgat
gttttcaatgaggttggaaacaacatcacagtgattgagatagctgttgtagaaagattg
gaaaaactggatcaaatgatcccactgattattgcattttcctctgtgacagcagtagca
gtacctgcagttgcaattttgatctacgtgtcaagaaaagcaaagataaatggatcctac
agtcttgtaaaagcactcaggctgaaagtgtga
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