Strigops habroptila (Kakapo): 115612009
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Entry
115612009 CDS
T08851
Symbol
MSH4
Name
(RefSeq) LOW QUALITY PROTEIN: mutS protein homolog 4
KO
K08740
DNA mismatch repair protein MSH4
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115612009 (MSH4)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115612009 (MSH4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
AAA_14
AAA_22
nSTAND3
ATPase_2
AAA_28
AAA_29
AAA_30
AAA_23
AAA_27
Motif
Other DBs
NCBI-GeneID:
115612009
NCBI-ProteinID:
XP_030351644
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Position
8:63439514..63469504
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AA seq
939 aa
AA seq
DB search
MLKESSKAGACRREAASATSESYTGRCSSTSGLGGPAERPPRYTLGLLQTPRSTTGSTGD
LSSGVARPGSSSGEGLAPSRVAGVKAPVSGREESYFGDKSSCVENTSTLNLTSSSVQGLN
SACVGRTPLSSSRSVCGSHTPLMGYSVTSSSAVSAHTAASVIVAVVEGRGLARGEVGMAS
IDLKNPEVILSQFSDNTTYAKVITKLKILTPLEIIMSNTACDAGNTTKLFSLITEHFKNV
TFTTVQRKYFNETKGLEYIEQLCASEFSTIFMEVQSKYYCLAAAAALLKYVEFIQNSVYA
PKSLKVRFQGSEKTAMIDSSSAQNLELVINNRDSRNGHTLFGVLNYTKTPGGSRRLRSSI
LEPLVDAETINTRLDCVQELLQDEELFFGLQAVISKFLDTEQLLSVLVQIPKQDTVKTAE
SKITNLIYLKHTLELVEPLKAALRSCTTPLLKAYYNSLEDTRFGIMLEKITTVINDDTRX
TKGCLSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMIAQLAEKYNLPMKTSFSSAR
GFFIQTNVDCSTLPNGQLPSEFTKITKMKNTYSFTSADLMKMNERCQESLREIYHMTYLI
VCKLLNEIYEHIHCLYKLSDIVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILE
KIAVEKPVPNHTYSTEGNNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYCSFRI
AEQIFTRIGVDDDIETNASTFMKEMKEITYIIQNANDKSLVIIDELGRGTSAEEGIGICY
AACEYLLNLKAFTLFATHFLELCHIDALYPNVENYHFEVQHVRSSAGNKEKVAYTYALSK
GYTEEKNYGLKAAEVSSLPSSVIVDAKEITNHIANQILHRQKSTPEMMRQRAVYHLAMRL
VQTARNSRLDPDSLRIYLKGLKKKYEASCPAPEQNDEQQ
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaagaaagcagtaaggcgggcgcgtgtaggcgggaggccgcctcggccacctcg
gagtcctataccggccgctgctcttccacgtcggggttgggagggccagcggagcggccg
ccccgctatacccttgggctgctgcagacgccgcgcagcacgacgggcagcaccggagat
ctctccagcggcgtggcgaggccgggcagctccagcggggagggcctcgctcccagccga
gttgccggggtgaaggcgccggtttcgggaagagaagaatcatattttggggacaaaagt
tcttgtgtagaaaacaccagcacactgaatctcacgagttcttctgtgcaaggcctgaat
agcgcatgtgtaggaagaacacccctctcttctagcagatctgtttgcggaagccatacc
cctcttatgggatattcagttacatcctcatctgcagtctctgctcatactgctgcgtca
gttattgtagctgttgtagaaggaagaggccttgccagaggtgaagtaggaatggccagt
attgacttaaaaaatcctgaggtgatattatcacagttttcagacaatacaacttatgcc
aaggttattactaagctcaagattttaacaccgctagaaatcataatgtcaaacactgct
tgtgatgcagggaacacaacaaaattgttcagtctgataacagaacatttcaagaatgtg
acctttacaactgtgcaaagaaaatacttcaacgaaactaagggtttggaatacatagaa
caattgtgtgcatctgaattcagcaccattttcatggaggttcagtcaaagtattactgt
cttgcagctgctgcagctttgctaaaatatgtggagtttattcaaaattcagtttatgct
cctaaatcgctcaaggtgcgtttccaggggagtgagaaaacagccatgatagattcatca
tcggcacaaaatctggaattagtgattaataacagagattctcggaatggtcacacgctt
ttcggtgtactaaattacaccaaaactccgggtggaagtcgaagacttagatccagtatc
ctggagccactagtagatgccgaaacaattaacacaagactggactgtgttcaggaatta
ctccaggatgaggagctcttttttggtcttcaagcagttatctcaaaattcctggataca
gaacaactactttcagttttggtacaaattccaaagcaggacacagttaaaactgctgaa
tcaaaaataactaatctaatctacctgaaacatactctagaacttgtggagcctctaaag
gctgctttaagaagctgtaccacaccgctgctaaaggcttactacaattctcttgaagat
acaagatttggaattatgcttgaaaagattacaactgtcattaatgacgacacaaggtag
acaaaaggatgtctgagtatgaggacccagaaatgctatgctgttaagcctaacatcaac
gaatttctcgacatagctcgtagaacatacacagaaattgttgatgacatagcaggtatg
atcgcacaacttgcagaaaagtacaacctgccaatgaaaacaagtttcagctctgctcgt
gggttttttatccagacgaatgttgattgttcaacattacccaatggccaacttccttca
gaatttacaaagatcactaaaatgaaaaacacatatagcttcacttcggcagatttaatg
aagatgaatgaaagatgtcaggagtccctgagagaaatatatcacatgacctatttaata
gtgtgtaagctactgaatgagatctatgaacacattcattgcctatacaagctgtctgac
attgtgtccatgctggatatgctgctttcatttgcccatgcctgcaccctttctgattat
gttcgtccagaatttacagatactttagccatcaagcagggatggcatcccattcttgaa
aagatagctgtggaaaaacctgtgcctaaccatacatactcgacagagggtaacaacttt
gtcattattacgggaccaaatatgagtggaaaatcaacgtacctaaaacagattgctctt
tgtcaaattatggcacagattggttcttatgtcccagcagagtattgttcttttcgaata
gcagagcagatatttaccagaataggtgtagatgatgatatagaaacaaacgcatcaaca
ttcatgaaggaaatgaaagagataacatacatcatacaaaacgctaatgacaaatcactc
gtcataattgatgaacttggcagaggtaccagcgctgaagaaggaattggcatttgttac
gctgcctgtgaatatctgctgaatttaaaggcatttacattatttgctacacatttcctg
gaactgtgtcatatagatgccttatatcccaatgtggaaaactaccattttgaagtgcaa
catgtgagaagcagtgctggaaataaggagaaagttgcttacacttacgcactctctaaa
ggctatacggaggaaaagaactatggattaaaagctgcagaagtttcctccctaccatca
tctgtaattgtggatgcaaaggaaatcacaaatcacattgcaaaccaaattttgcacagg
cagaagagcactcctgagatgatgagacagagagctgtgtaccatctagcaatgagattg
gttcagactgccagaaattctcgattggatccggacagtttgcggatatatttgaaaggc
ttgaagaagaagtatgaagccagttgtcctgcacccgaacagaacgatgagcaacagtaa
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