Strigops habroptila (Kakapo): 115612180
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Entry
115612180 CDS
T08851
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115612180 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shab03041
]
115612180 (PRPF38B)
Spliceosome [BR:
shab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115612180 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
115612180 (PRPF38B)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
115612180
NCBI-ProteinID:
XP_030352044
UniProt:
A0A672UMK0
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Position
8:13773383..13783066
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AA seq
547 aa
AA seq
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MANNSPAVGAGNCQGQQAAQHQPGAVPPAQQQLQSGAPKPAASGKQGNVLPLWGNEKTMN
LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR
GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW
FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKAIDQQIKSRP
RKIKKDGKEGMEEIDRHVERRRSRSPRRSISPRRSPRRSRSRSHHREGHGSSSFDRELER
ERERQRLEREAKEREKERRRSRSTDRTLERRRSRSRDRYRSRSRSRDRKGDRRDRDRERE
KENERSRKKERDYDKERGSEREKDRSRERSKERKSKGDTEERRHKDDKDDKKHRDDKRDS
KKERKHSRSRSRERKHRSRSRSKNTGKRSRSRSKEKSSKHKNESKDKSNKRSRSRSRGRT
DSVEKSRKRDQSPSKEKPRKRSRSKERSHKHDHSDSKDHSEKHDRRRSQSTEQESQEKQQ
KNKDETV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacagccccgccgtcggcgctgggaactgccaggggcagcaggcggcccag
caccagcctggcgccgtcccgccggcccagcagcagctgcagagcggagcccccaagccg
gcggcctcaggcaagcagggcaacgtgctgccgctgtggggcaacgagaagaccatgaat
ctgaaccccatgatcctcaccaacatcctctcgtcgccctacttcaaggtgcagctctac
gagctcaagacttaccacgaagtggtggacgagatctacttcaaggttacacatgttgaa
ccatgggaaaaggggagcagaaaaacagcaggccagacagggatgtgtggaggggtgcgt
ggtgttggaactggaggaattgtgtctactgccttttgtctgctctacaaattatttaca
ctgaaactcactcgtaagcaagtgatgggccttataactcatacagactccccatatatt
agggctcttggatttatgtatattaggtacacacagccacctacagatctatgggactgg
tttgaatcctttcttgatgatgaagaggacctggatgtgaaggcaggtgggggttgtgtt
atgaccatcggggagatgcttcgttccttcctcaccaagcttgaatggttttccacgttg
tttccaagaattcctgtgccagtccagaaagccattgaccagcaaattaaaagcagacct
agaaaaatcaagaaagatggcaaggagggaatggaagaaatagaccggcacgtggaacgt
agacgttcaaggtctccaagacgatccatcagtcccaggaggtctcccagaagatccaga
agcagaagtcatcatcgggaaggccatggatcatctagctttgatagagaactagaaaga
gaaagagaacggcaacgattagaacgtgaagctaaggagagagaaaaagaaaggcggaga
tctcgaagcaccgatcgcacactagaacggaggcgaagcagaagcagggacagatacaga
agccgtagtcgaagtcgtgacaggaaaggagatagaagagacagggatagggagcgagag
aaagagaatgaacggagccggaaaaaggagagagattatgataaggaaagaggtagcgag
agggaaaaagatcgctctagagaaagatcaaaagaaaggaaaagtaagggtgatacagaa
gagagaagacacaaagatgacaaggatgacaagaaacaccgggatgacaagagggattcc
aaaaaagagagaaaacatagtagaagtcgaagcagggaaagaaagcacaggagtaggagc
cgaagtaagaatacagggaagcgcagcagaagcaggagcaaagagaaatcaagtaaacat
aaaaatgaaagtaaagataagtcaaataaacgaagtagaagcagaagcagaggaagaaca
gatagtgttgagaagtccagaaaacgagaccagagtcccagcaaagaaaagcctagaaag
cgtagcagaagcaaagaacgttcccacaaacatgatcacagcgacagcaaggaccattcg
gaaaaacacgaccgtcgaaggagccaaagtacggaacaagagagccaagaaaagcaacag
aaaaacaaagatgagactgtgtga
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