Strigops habroptila (Kakapo): 115613889
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Entry
115613889 CDS
T08851
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115613889 (SCAF8)
03041 Spliceosome [BR:
shab03041
]
115613889 (SCAF8)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115613889 (SCAF8)
Spliceosome [BR:
shab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
115613889 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115613889
NCBI-ProteinID:
XP_030355795
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All DBs
Position
10:complement(2865423..3072664)
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AA seq
1357 aa
AA seq
DB search
MEAVKAFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQSLPDPWV
SQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPTSQLPLVPESVNNSL
FHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQQQFLEVE
ANVDDSMDIQQQDMDIDEGQDVAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKI
GSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQETVNTEW
ETARSSEAAKENTQTTQSAAVDKNTVITTQTEAYTQPVTMLQIPVAPAVPAVSLVPPAFP
VTMSVPPPGYSAIPPPPFLRASFNPSQPPPGYMPPPVPPVVPPPVVPPPVVPPVVPTPLV
QPPLPIAQETMKDVPFTSLVLPVGTVTSNLATPTLSAGNVFNPLPINKPESDEKGSHLAD
LQISSSENNRSVQNDVSSSSGLVGGVQPSSVSSSSGLTGEGQPPSVSSSSGLAGGVQPPS
VSSSSGLVGGVQPPAVSSSSGLAGGVQLPTVSSSSSLAGGVQPTSVSSSSGLMAGVQPPN
VSSSSGLIAGVHPPSVSSSPGLLTGMQLPNVSSSSGVLAGVQPPSVSSNSGLLIMPPPNV
SSSSGLMGVPPPNISSSSGLLAMQHPAGVPNMPHLNISSQRMPGMPLIDIRPGLMPHSPG
PRFPLMQPGMPPQRSIPPPAILDPSLHPPPRGPFPSGDIFNQTERPFGTPGRQNIDSISN
PEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSPVDVRDSVGRPPVDPREGIGRPPVD
GREHFARPHVDMRENFGRPGIDNLGRREHFGFNSDKHWGQRGDYDEREHHAFPIYGGPKG
FHEDRERFRHVNYRFDSRSGPNWNRGFEQDAHRDFDDRRRPWERQRDRDDRDFNFCREIN
GNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKVDNLPQVNGENTETESQPPTAQVQDDP
ELYEKLTSSVDINKEKSDTEADIESEPVVESTETEGT
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaaagcctttaacagcgagttgtactcactaaatgattataagccaccc
atttctaaagctaaaatgacacagatcaccaaggcagcaatcaaagctataaagttctac
aagcacgttgtacagagtgttgagaaattcattcaaaagtgcaaaccagaatacaaggta
cctggtctgtatgtcattgactccattgtgagacagtcccggcatcagtttgggcaagaa
aaggatgtattcgctccaaggttcagcaataacatcatcagcactttccagaacttatac
cgttgtcctggggatgacaagagtaaaattgttagagtgctaaatttatggcagaagaat
aatgtgttcaagagtgaaattattcagcctctcttggatatggcagcaggaattcctcct
ccagttgtgacccctgtcttgccgagcactacagctgctatgagcaacaatacaccagga
acacctgtgactccagttactccagctaatgtagtgcagagtttacctgacccttgggta
tctcagattgctaatacagatacccttgctgctgttgcacagattttacagagtcctcaa
ggccaacagcttcagcagttgatacagacactgcagatacagcagcagaaacctcagcct
tcactacttcaagctctggatgctggtcttgttgttcagttgcaggccctcacagcacaa
cttacagctgcagctgctgctgctaacacacttaatccactggaacagagcgtctctttt
aataagaagctgatggacaggtttgacttcggggaagaatctgaacaaaatgaagagcct
aaaaaagaaactcccacttcccaactgcctttagtaccagaatctgtgaacaactccctt
tttcaccaactagctgaacagctacagcagcaaaatttagaacacctcagacaacagctt
ctggagcaacagcagcctcaaaaggcaagccctgaggagaatcaagaaggaaattttggt
tcagagcactctgcatcaccatcacaagggagcagtcagcagcagtttttagaagtggaa
gcaaatgtagatgattcaatggatattcaacaacaggacatggatatagatgaaggtcag
gatgttgctgaagaagagatttttgaacaagaagaaaagaaatcagctgttcgttcaaga
tcaagaactcgctcaagatctcgttcaaggtcaccaagaaaacgaaggtcgaggtcacgg
tctggttctcgtaagcgtaaacacagaaaacgttcacgctcaagatcaagagaaaggaag
agaaagtcatctcggtcatattccagtgagagaagggcaagggaaagggaaaaagaacgt
cagaaaaagggtttgcctcctatacggtcaaaaacactaagtgtttgcagtactactctt
tgggtaggtcaagtagacaagaaggccacacagcaagatttaactaacttgtttgaagaa
tttggacaaatagagtcaattaatatgattcccccaagagggtgtgcttatgtctgtatg
gtgcatagacaagatgcgtttcgtgctcttcagaaacttagttctgggtcctataaaatt
ggatctaaaattattaagattgcctgggctttgaataaaggtgtgaaaacagaatacaag
caattctgggatgtggatctcggagtttcatatattccttgggagaaagtaaaattggat
gatttggagggctttgctgaaggtggcatgattgaccaggaaacagtaaatacagaatgg
gaaacggccagaagctcagaagctgctaaagaaaatactcaaactacacagagtgctgca
gttgataagaatacagttattacaacgcagacagaagcttacacgcaaccagtcactatg
ctgcagatcccagtagctccagctgtgcctgccgttagcttggttccacctgcatttcct
gtcacaatgtctgtcccccctcctggttatagcgcaattcctcctccacccttcttgcgt
gcgagtttcaacccttcacagccacctccaggttatatgcctcccccagttccccctgtc
gttccaccgcctgttgtcccaccacctgttgttccaccagttgttccaacacctttagta
cagcctccattaccaattgcacaagagacgatgaaggatgttccttttactagccttgtt
ctaccagttggcacagttactagcaatctagctactccaacattatctgctggaaatgtt
tttaatcctctgccaatcaacaaaccagaatcagatgaaaagggatcacatcttgcagac
cttcagatttcttccagtgaaaacaatagatctgtgcaaaatgatgtttcgagtagctct
ggacttgttggaggagtgcagccatccagcgtctcaagcagttctgggcttactggagaa
gggcaaccacccagtgtctcaagtagctctggacttgcaggaggagtacagccacccagt
gtttcaagcagctctggacttgtaggaggagtgcaaccgccagctgtttcaagcagttct
ggtcttgcaggaggagtgcagctaccaactgtctccagtagctcttctcttgctggcgga
gttcagccaacaagtgtctcaagtagctctggacttatggctggagtgcaaccaccaaat
gtctcaagtagctcagggcttatagcaggagtgcatccacccagtgtctcaagcagccct
ggccttctgacaggaatgcagctacccaatgtctcaagcagctcaggagttctggcagga
gtacagccaccaagtgtctctagcaactctgggcttctcataatgcccccacccaatgtt
tcaagtagttctggactgatgggtgtgccaccaccaaatatttcaagtagttctggactt
ctggcaatgcaacatccagctggggttccaaatatgcctcatttaaatattagtagtcaa
aggatgccaggaatgcctcttatagatatccgtccaggcctaatgccccattcacctgga
ccaaggtttccattaatgcagccaggaatgccaccgcagcgtagtattcctcctccagca
atccttgatccatctcttcacccgccacctcgaggtccttttccttcaggagatattttt
aatcaaacagaaagaccttttggaacaccaggaagacaaaatatcgacagcatttctaat
ccagagaaaagactaccacttggaggtgataacattcagcaggaaggagacagagattat
cgctttcctccagtggaaaacagagataatcttaacaggccatctccagtggatgtcaga
gattctgttggacgaccaccagttgatccaagagagggtatcggaaggcctccagtagat
ggaagagaacactttgcaagaccacatgtagacatgagagaaaattttggaagaccaggt
atcgataaccttggtcgaagagagcattttggtttcaattcagacaagcactgggggcag
agaggagattatgatgaaagagagcaccatgccttccctatttatggtggccctaaaggc
ttccatgaagacagagagaggtttcggcatgtaaactatagatttgatagcagaagtggt
cccaattggaatagaggatttgaacaagatgctcacagagattttgatgaccgcagaaga
ccctgggaaagacagagggatagggatgacagagattttaatttttgcagagaaattaat
ggaaacaggtttggaagagacagaatgtcaaacaactggatcccccctccacacccacgg
gtttttgaatatttcgatggggccacttcccagcgcaaagtcgataatctgccccaggta
aacggtgaaaatacagagacagaaagtcagccaccaactgcacaggtgcaggacgatcca
gaactttatgaaaaactgacatcttccgtcgacataaacaaagagaagagtgacacagaa
gctgatatagagagtgaaccagtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
