Strigops habroptila (Kakapo): 115614052
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Entry
115614052 CDS
T08851
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shab04121
]
115614052 (PDZRN3)
Enzymes [BR:
shab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115614052 (PDZRN3)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
115614052 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
115614052
NCBI-ProteinID:
XP_030356159
LinkDB
All DBs
Position
11:29808986..29952431
Genome browser
AA seq
1061 aa
AA seq
DB search
MGFELDRFSGDVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCDQGCGLMLTHGERRAGGHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLILHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDTGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRTPRTKGFAPAHDCQLVDVGTQTDI
TFEHIMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEESKNISLLVARPELQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTSSNTL
GSQKKLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSAN
PYSLYYHNSTLDMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLR
RTAEGINCQGNEGAVAYNVSQKNLFASSESHESSTGKCHASAKDPDLGKQLESKERKASD
ESKSPTHSQKPSGSYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDFNSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAIS
EMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKM
MKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggacgtggatcccgacttcaaatgcaacctg
tgcaacaaagttctggaggacccgctgaccaccccctgcggccacgtcttctgcgccggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctccagcacttgggcgagcac
gccgagacctgcgacttctccccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctccgcgacgtggaggcgcacatgcgggagcgctgcgaggcgcggcccgccggcctc
tgcgaccagggctgcggcttgatgctcacccacggcgagcgccgggccggcgggcacggc
tgcctgcgcgccctgcgagcccacggagccgcgctgcaggcgcgggcggcggcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctcctgtcgcga
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgataccagaagcgctttacg
cagtacagcgcccgcctcgacgccctggcccgcgcccgcgccgcctcgcccggcaagggt
gaagaaactaaagcactgactctcatccttcatcgtgactctggctctcttggatttaat
attattggtggccgaccgtgcgtggacaatcaagatggttcatctagcgaaggaattttt
gtatcaaaaatagttgacacggggcctgcagctaaggaaggagggctacagattcatgac
aggattatagaggtcaatgggaaggatttatctaaagcaacacatgagcaggcagtggaa
gcattcaagacggccaaggagcccattgtggtgcaggtcctgagaagaactccacgcacc
aagggcttcgctcctgctcacgactgtcagctcgtagatgtgggcacacagacagacatc
acttttgaacacatcatggctctaagcaagatgggctcacctacgccacccgtctctgtg
ctagacccatacctcctacctgaagaccatccatcagtgcatgaatactatgacccaaat
gactacatgggaggaattcatcaagaaatggacagagatgagttggaattagaggaagta
gatttacatcgagtgaacagccaggacaagcttggccttactgtatgttacagaacagat
gatgaagatgacatgggtatttatgtgagtgagattgatcccaacagtattgctgcaaaa
gacggtcgactccgagaaggggatcgcattattcagatcaatggcatagaggtacagaac
cgagaagaagctgtggcacttctcaccagtgaagagagcaagaatatctccttgcttgtt
gcaagaccagaacttcagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttgcacatggacatgttagaggaacagcaccaccaggcaatgcaatttactgcc
agcatgctccagcagaagaagcatgaggaggatggaggtaccacagatacagccactatt
ttatctaaccagcacgagaaagacagtggcgtggggcgcacagacgacagcactcgtaac
gacgagagctccgagcaggagaacaacgcggatgatcacaccacctcctccaacacttta
gggagccagaagaagctgacgtacagtcatgacaccctgggaagtggcgatatgcagttc
agcaacgagtcgtttatctcagccgactgcacagacgtcgacttccttggcatccctgtg
gacgaatgcgagcgattccgggaactgctggaactgaagtgccaggtgaagtctgccaac
ccttacagcctgtattaccacaacagcactctggatatgagcaaaagcgaccaggaaagc
gttgacagagagctggagatgctgaacgaggagctgcgcaatatcgagctggagtgcctg
aatattgtgagagctcataaaatgcagcagctgaaggagcagtaccgggagccctggatg
ctccataacagcgggttccgcaactataacaccagcatcgacgttcgcaggcacgagctc
tcagacattacggagctgcccgagaagtctgacaaggatagctcgagtgcctataacaca
ggcgaaagctgccgcagcacaccactcacgctggagatctcccctgacaattcgctgcgc
agaactgcagaaggcattaactgtcaaggtaatgagggggcagtggcatataatgtctcc
caaaagaatttatttgctagctcagaaagtcatgaatccagcactggtaaatgccatgcc
tctgcgaaagatcccgaccttggcaagcagctggaaagcaaggagagaaaagccagtgat
gaaagcaaaagccctactcacagtcagaaaccttctggctcctacgtctccccgtaccat
cactctccgtataagcatgctcatattcctgcccatgcacagcactatcagagctacatg
cagctgatccaacagaaatccgcagtggagtacgcgcagagccaaatgagtctggtgagt
atgtgcaaagactttaattcaagccagagcgaaccgaggatggagtggaaagtcaaggtc
agaagcgatgggacccgctacattacaaagaggccagtgagagacaggctgctgagagaa
cgtgccataaagattaaggaggagcgcagtggtatgaccaccgatgatgatgccataagt
gaaatgaagatgggccgttactggagcaaggaagagcggaagcagcatttagtgaaagcg
aaggagcagagaaggaggcgcgagttcatgatgcagagcaggttagagtgcttaaaggaa
cagcaaggtgcagaagaaaagaaagagatgaatatcattgaactgagccacaaaaaaatg
atgaagaagagaaataaaaagatatttgacaattggatgacaatccaggaactgctaacc
catggcactaagtcaccagacggcacacgggtgtacaattccttcctgtcagtgactact
gtataa
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integrated database retrieval system
