Strigops habroptila (Kakapo): 115614500
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Entry
115614500 CDS
T08851
Symbol
DDX54
Name
(RefSeq) ATP-dependent RNA helicase DDX54 isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shab03009
]
115614500 (DDX54)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115614500 (DDX54)
Ribosome biogenesis [BR:
shab03009
]
Eukaryotic type
Pre-60S particles
Helicases
115614500 (DDX54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
Motif
Other DBs
NCBI-GeneID:
115614500
NCBI-ProteinID:
XP_030357333
UniProt:
A0A672UUF1
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All DBs
Position
11:complement(12124561..12130832)
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AA seq
853 aa
AA seq
DB search
MSPPRVRRQPRGAPVPVSPLPAFPSTKEEDDADAVAEPDTRAMVRAQNQKKKKSGGFQSM
GLSYPVFKGIMKKGYKVPTPIQRKSIPAILRGRDVVAMARTGSGKTACFLIPMFERLKAP
SQAGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIA
TPGRLVHVAVEMKLKLHTVEYVVFDEADRLFEMGFAEQLQEIIARLPDSRQTVLFSATLP
KLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRSVVKPQDQTV
VFVATKHHTEYLKELLTAQGIRCTHVYSSLDQTARKINIAKFSQGKCPVLLVTDVAARGL
DIPMLDNVINYSFPAKAKLFLHRVGRVARAGRSGTAYSLVAPDEMPYVFDLHLFLGHPLV
LAGTQEMPADAAGVLGRVPQSLVDDEECLLLTDHEGSLELRSLRHVADNAHKQYLRSRPG
PSPESIKRAKDMDGSQLGIHPLFSARFEDTELERLKFVDSIKTYKSKATIFEINATSRTL
ASTVMRSKRRHDHALIEKYQRGQQEKRAAALKGQGLCPAPPAPEEGEGDKEEDLQHVFST
VVGQKRRRGRGGEGGPRKKLQQSAEQDKDFYIPYRPKDFESERGLSVGGEGSPFEQQAAG
AVLDLMGDENHNLNKSKQLLKWDRKKKRFVGQTGQQDKKKVKTESGRYISSSYKNNLYEK
WKQKYKVDERDEDEEDGHRREQFRGKQRRGHGEYLQQAAPGAPHRPPHCPTLSSAVSPNP
AGPVLAPARVRSELKNKQQILKQRKRAAKQRFLQSGGLKRLKARNRQRVQELRQMAFGRR
VAGTKKGKMRKRV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgcgcgtccgccgccagccccgcggagcgccggtccctgtgtccccactg
cccgccttccccagcaccaaggaggaggatgatgctgacgccgtggccgagccggacaca
cgggccatggtgcgggcccagaaccagaagaagaagaaatctggtggtttccagtcgatg
ggcctcagctaccccgtcttcaagggcatcatgaagaagggctacaaggtgcccaccccc
atccagaggaagagcatccccgccatcctgcgcggccgggacgtggtggcgatggcgcgg
acgggcagcgggaagacggcgtgtttcctcatccccatgttcgagcggctgaaggcaccc
agccaggccggggcgcgcgccctcatcctgtcacccacccgtgagctggccctgcagacc
ctaaagttcaccaaagagctgggcaagttcacaggcctgaagacagccctgatcctggga
ggagacaagatggaggaccagttcgctgccctgcacgagaaccccgacataatcattgcc
actcctgggcgcctggtgcacgtggcggtggagatgaaactgaagctgcacacggtggag
tacgtggtgtttgacgaggccgacaggctctttgagatgggctttgccgagcagctccag
gagatcatcgcccggctcccggactcccgccagaccgtgctcttctccgccacgctgccc
aagctgctcgtagagttcgcccgggctggtctcactgagcccatgctgatccgtctggat
gtggagtccaagctcagcgagcagctcaagctggctttcttccacgtgcgcggggacgac
aagccggccgtgctgctccatctgctccgcagtgtggtgaagccccaggaccagacagtt
gtcttcgtggccaccaagcaccacacggagtatcttaaggagctgctgacagcccagggc
atccgctgcacacacgtctacagctcgctggaccagaccgcccgcaagatcaacatcgcc
aagttctcccagggcaagtgcccggtgctgctggtcaccgacgtggctgcccgtgggctc
gacatccccatgctggacaatgtcatcaactacagcttccccgccaaggccaagctcttc
ctgcatcgtgtaggtcgtgtggcccgagctggccggagtggcactgcctactcgctggtg
gctcccgatgagatgccttatgtctttgacctccacctcttcttgggacacccgcttgtc
cttgctggtacccaggagatgcctgctgatgctgctggggtgctgggccgtgtcccccag
agcctggtggacgatgaggagtgcctgctgctcacagaccacgagggctctctggagctg
cggagcctgcgccatgtcgctgacaatgcccacaagcaatacctgagatcccggcctggc
ccctcgcccgagtccatcaagagggcaaaagacatggatgggtcccagcttggcatccac
ccactgttcagcgctcgctttgaagacacggagctggagaggctcaagtttgtggacagc
attaaaacctataagtccaaggcgaccatcttcgagatcaacgccacatcccggacgctg
gccagcaccgtgatgcggtccaagcggcgccacgaccatgccctcattgagaagtaccag
cgtgggcagcaggagaagcgggcagcagctctcaaagggcaggggctctgcccggccccc
cctgcacccgaggagggagaaggtgacaaggaggaagacctccagcacgtgttctccacc
gtggtgggccagaagcgaagacggggccgagggggagaaggtggccccaggaagaagctg
cagcagtcggcggagcaggacaaggacttctacatcccatacagacccaaggacttcgag
agcgagagggggctgagtgttggtggcgagggcagccccttcgagcagcaggcagccgga
gccgtgctggatctcatgggcgatgaaaaccacaacctcaacaagagcaagcagctgctc
aagtgggaccgcaagaagaagcgttttgtggggcagacgggccagcaggacaagaagaag
gtgaagacggaaagcgggcgctacatcagcagctcctacaagaacaacctctatgagaag
tggaagcagaagtacaaggtcgacgagcgggatgaggatgaggaagacggacacaggcgg
gagcagttccgcgggaagcagcggcgcgggcacggtgagtacctgcagcaagcggcacca
ggagccccacatcgccctccccattgccccacactgagctcggccgtgtcccccaatccc
gcagggcctgtgctggcgcccgcccgggtgcgctcggagctgaagaacaagcagcagatc
ctgaagcagcgcaagcgggcggccaagcagcggttcctgcagagcggggggctgaagcgc
ctcaaggcccgcaaccggcagcgtgtgcaggagctgcggcagatggccttcgggcgcagg
gtggcgggcaccaagaagggcaagatgaggaagagggtgtag
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