Strigops habroptila (Kakapo): 115615258
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Entry
115615258 CDS
T08851
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115615258 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115615258 (CSTF1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
115615258 (CSTF1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
PROPPIN
VPS8_N
Beta-prop_WDR11_1st
Beta-prop_WDR75_2nd
Frtz
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
115615258
NCBI-ProteinID:
XP_030359045
UniProt:
A0A672TYI1
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Position
13:complement(7171438..7179647)
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AA seq
538 aa
AA seq
DB search
MSGRRVAAACDRRQLPRGMGSMASPLLDPRPLRLPFLEADSRLQSICGRSMQQPSRRSIL
RSRPPPPPPPLPPPPPIDALRAPVAILGGERGRQKEGSAPPRHSLLTMYRTKVSLKDRQQ
LYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGRSD
TVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIK
ILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSR
DYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFV
SCNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAI
FSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLPDE
RTISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtcgccgtgtcgctgcagcatgtgatagacgtcagctgccacggggcatgggt
agcatggcatctcccctcctcgacccgcgcccgcttcgactgccgtttcttgaggctgac
agtcgcctccaatcgatctgcgggcgctcgatgcagcagccttcgcggaggagcattctt
cggtcccggccgccgccgccgcctcctcccctgccgccgccgccccccatcgatgcgctc
agggctccggtcgccattttagggggagagcgagggaggcagaaggaagggtcggcccct
ccaaggcattccttgctcacaatgtatagaacaaaagtcagtttgaaagaccgtcagcaa
ctttataaactgataattagtcagctgctatatgatggatacataaatattgctaatggc
ttgataaatgagataaaaccacaatcagtctgtgcaccatctgaacaactgctgcaccta
attaagttaggaatggagaatgatgacagtgctgttcagtatgcaattggacggtcagat
acagtagctccaggcacaggaattgacttggaatttgatgcagatgtacagaccatgtct
cccgaggcttctgaatatgagacttgttatgtcacatctcacaaagggccgtgtcgtgta
gctacatatagcagagatggacagttaatagctacaggatctgctgatgcctcaataaaa
attcttgatacagagagaatgttggccaaaagtgctatgcctattgaggtaatgatgaat
gagacagcacagcaaaacatggaaaatcatcctgttattcggactctgtacgatcatgtg
gatgaagttacgtgtttagcttttcacccaacagaacagatcctagcatctggttcaagg
gactatacacttaaattgtttgattattcaaaaccttctgccaaaagagccttcaaatac
atacaggaggcagagatgttgcgctcgatttcttttcacccttcgggagatttcatactt
gttggtacccagcaccctactttacgactgtatgatatcaatactttccagtgttttgtg
tcttgcaatcctcaagatcagcacactgatgctatatgttcagtaaattacaacgcaagt
gcaaacatgtatgtgacgggaagtaaggatggatgcatcaaactgtgggatggtgtttca
aatcgctgcatcactacttttgagaaggcacatgatggagctgaagtctgctctgctatt
ttttccaaaaactcaaagtatatcttgtcaagtggaaaagactctgtagctaaactatgg
gagatatccactggtcgaacactggtcaaatacacaggagctggtttgagtggacggcag
gtacacaggacccaggctgtcttcaaccacacagaagattatgtgctgcttccagacgaa
aggaccataagtctctgctgctgggactcaagaactgctgaacggagaaatcttctttct
ctggggcacaacagcattgtccgttgcattgtgcattctcctaccaatcctggcttcatg
acctgcagtgacgactacagggctagattttggtacagaaggtcaacgacagactaa
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