Strigops habroptila (Kakapo): 115615401
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Entry
115615401 CDS
T08851
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03015
mRNA surveillance pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115615401 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
115615401 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115615401 (PABPC1L)
03041 Spliceosome [BR:
shab03041
]
115615401 (PABPC1L)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115615401 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
115615401 (PABPC1L)
Spliceosome [BR:
shab03041
]
Complex C
Other components
Complex C specific factors
115615401 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RBD_DEAH11
RRM_RdRP1_2
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
115615401
NCBI-ProteinID:
XP_030359348
LinkDB
All DBs
Position
13:11283069..11295589
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AA seq
635 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDNTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSVQPSRPPPAYPASTPILRAAAPPRRLLSNISTMRQASTQVPRVP
HQAQRVANIGTQTVSARVPSSPTLPRGTPQYKYSSAVRNVQAMGHMSPVVAPQVGEPAVH
IQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHPMLAGKITGMLLEIDNSELLLLLE
SPDSLHSKIEEAVAVLQAHQATETSHKGSAAVFLQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctagtggccctggctacccattagcctctctctatgtgggagacctgcacccg
gatgtgaccgaagccatgctctatgagaagttctcacctgctgggcccatcatgtccatc
cgagtctgtcgggacgtcgccacgcgccgatcgctgggctatgcctacatcaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaactttgaagtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccctgggctcaggaagtcaggggttggaaac
gtcttcatcaagaacctggatgactccattgataacaaagccctgtacgacacgttctct
gccttcggaaacatcctgtcgtgcaaggtggtttgtgatgaaaatggatcccgtggctat
ggctttgttcacttcgagactcacgaggcagcaactcgggccattgagaccatgaatggg
atgttgctcaatgaccggaaggtgtttgttggccatttcaaatcccgcaaagagcgcgag
gcagagtttggggctaaagcgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggatgatgacagactgcgggaaatattctccaagttcggaaagacgctaagtgtc
aaagtcatgatggacaacaccggccgctcaaagggctttggatttgtcaacttcgagaag
catgaagaagcccagaaggcggtggctgacatgaacgggaaggagatcaacgggcgcatg
gtgtacgtgggccgagcgcagaagcggctggagcggcagagcgagctgaagaggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatgggatagatgatgagaggctaaggaaggagttctctccctatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtatgtttt
tcctccccagaagaggctaccaaggccgtgacagaaatgaacgggcggattgtcagcact
aagcctctctacgtcgcacttgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtatatgcagagattagccaccatgagggccctgcctggccctctcctgggctctttc
cagccccccccggggtacttcttaccccctattccccagccacaaaccagagctactttc
tacagccccagcccagttgtcccagtccgtccggccactcgctggagtgtgcagccctcc
cggcctcccccagcgtatcctgcatctacccctatcctgagggctgccgcaccgccccgg
cgcctgctgtccaacatcagcaccatgagacaggcgtccacccaagtgccccgtgtgccc
caccaggcacagagagtggccaacattgggacgcagaccgtcagcgcacgggtgccctcc
tcgcccaccctgccgcggggcaccccgcagtacaagtactcctcagctgtcaggaacgtc
caggccatggggcacatgtcacctgtggtggccccgcaggtgggagaacctgctgtgcac
atccaggggcaggagcctctgacagcatccatgcttgcagcagcccctcctcaggagcag
aagcaaatgataggtgagcgcctctaccctctgatccatgccatgcatcccatgctggct
ggcaagatcactgggatgctgctggagatagacaactccgagctgctgctgctcctggag
tcgcctgactcccttcactccaagatcgaggaggcagtcgctgttctccaggcgcaccag
gccacggagacctcgcacaagggcagtgctgcggtgttcctgcagtga
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