Strigops habroptila (Kakapo): 115615594
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Entry
115615594 CDS
T08851
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03440
Homologous recombination
shab03450
Non-homologous end-joining
shab04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115615594 (RAD50)
03450 Non-homologous end-joining
115615594 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
115615594 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shab03032
]
115615594 (RAD50)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115615594 (RAD50)
DNA replication proteins [BR:
shab03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
115615594 (RAD50)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
115615594 (RAD50)
BRCA1-C complex
115615594 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
115615594 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
DUF2703
KH_PARP14_1
AAA_13
Motif
Other DBs
NCBI-GeneID:
115615594
NCBI-ProteinID:
XP_030359782
LinkDB
All DBs
Position
12:complement(8766774..8787385)
Genome browser
AA seq
1333 aa
AA seq
DB search
MSGQRIFNVHISDWRRGSSIEMSRIEKMSILGVRSFGVEDKDKQIISFFNPLTILVGPNG
AGKTTIIECLKYISTGDFPPGTKGNSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRS
MVCTQKGKKTEFKTLESVITRTKHGEKVSLSSKCAEIDREMVSALGVSKAVINNVIFCHQ
EESNWPLSEGKALKQKFDEIFSATRYIKALESLRQVRMKQSLKVKECQTELKYLKQNKEK
AQEIQDHLSNREAQLAASKENVKSIESQLDPLKSSLATVEQNLTKVMRIDNDVKALESRR
RQMEKDNQDLQQKMEKVFQGTDEQLKDRYQSHQRTVKEKERRLLDCKRELDRATKECQRF
NSEKSELLIEQGRLQLEAGRHQEHITMRDSLIQSLAAQLELDGFEQTPFNEWHITSFHTL
LKERQRRDTEAAQHLMREFTRKEAMKQKQIDEIRDKKTGLEKTIDLKSDIQNKKQVELKN
VKYELKQLEGFSDRILELEQEIVKTEKELEKTERSSSVEKLELEVQTLQNEKINLDKALR
KLDQEIEQLNLHTTTITQMEMLKKDKVDKEEQIRKVKARHSDELTSLLGYFPNKNQLEDW
LHSKNRKINQTRDNLAGLNKRLVSVEYQKTYVSNELRNKEEQLSLHEAKLFDVCGSQDFD
SDLDKLQDEIEKSSKQRAVLAGATAVYSQFITQLTEENQRCCPVCQRAFQTEADLQDVIS
DLQSKLRLAPDKLKSTESELKRKEKKRDEMMSLKPLRQTVVELQARDIPNLRNKIQNANR
DLTGLKGEIEEQESLLQTALSEEEGAKACLQDITLMERYQTDIRDVERKIAQQEAKLLGV
DLSRTVLQVSQEKQEKKHLWDTVTGKIELNQKLKQDQQNQIQQLKSTVNELKAEKLQIFS
SMQRRRQLEEQTVELTTEVQDLCREIKEAKEQVFPLDATLEKLQQEKEELVNKRTTSNKE
TQDKMNGINEKVKDINKYVKEIENYIQQGRDDYKKQKESELNEVNSQLADCEKQKEKISK
EMETIRQDIDTQKVQERWLEDNLTLRKRNEELKDVEDNIKRLVREMGEMKVLEMKNEQKQ
LEEKIESLKRNHHVALGRQRGFEEEIVRFKKELREPQFKDAEEKYRDMMIVMRTTELVNK
DLDLYYKALDKAIMTFHSMKMEEINKIIRELWRSTYRGQDIEYIEIRSDADENVSASDKR
RSYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDR
ENIESLAHALMEIIKSRSQQRNFQLLVITHDEDFVELLVRSEYVETFYRIRKNIDQCSEI
MKCSASSLGSYVH
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggacaaaggatttttaacgttcacatttctgactggaggagaggaagttccata
gaaatgtcgcggattgagaaaatgagtatccttggagtgaggagttttggtgtagaggat
aaagacaaacaaattatcagtttttttaatccattaactattttagtgggaccaaatggt
gcagggaaaacgactatcattgaatgtcttaaatacatatccactggagattttcctcct
ggcaccaaaggaaactcatttgttcacgatccaaaggttgccaatgaaacagatgttcga
gctcagattcgattgcagtttcgagatgtaaatggagagctcgtagctgtccagcgatcc
atggtctgtacccagaaaggcaagaaaacagaatttaaaacccttgaatctgtcattact
agaacaaagcatggggagaaggtcagtctgagctccaagtgtgcagaaattgatcgagag
atggtcagcgccctgggtgtttccaaagcagtgatcaacaatgtcattttctgccaccaa
gaagaatccaactggccattaagtgaagggaaggccctgaagcagaaatttgacgagatc
ttctcagcaacaaggtatattaaagcactcgaaagtctccgtcaggtccggatgaaacaa
agcttgaaagtaaaagagtgtcagacagagctgaaatacctgaaacagaataaagaaaaa
gcacaggaaatccaggatcatctgagcaacagagaggctcagctggctgcttctaaggag
aatgtaaagtcaattgagagtcagcttgatcctctcaagagttctctggcaacagttgaa
cagaatctcaccaaagtcatgaggatagacaacgatgtaaaggccctggagagcaggagg
cggcagatggagaaagataatcaggatttgcaacagaagatggagaaggtgtttcaagga
acagatgaacagctaaaggataggtaccagagtcaccagagaacagtgaaggagaaggag
aggagattattagactgtaagcgggaattagatcgagccactaaagaatgccagaggttt
aacagtgagaaatcagaactacttattgaacaaggtcgtcttcagctggaagcaggtcgt
caccaagaacacatcaccatgagggattcattaattcagtccttggcagcacagctggaa
ttagatggttttgagcagacaccttttaatgaatggcacattaccagttttcacacgttg
ttgaaggagagacagagaagagatacagaagctgcacagcatttgatgagagaatttaca
cgaaaagaagcaatgaaacagaagcagatagatgaaataagagacaagaaaactggatta
gaaaaaaccattgacctgaaatcagacattcaaaataagaaacaagttgagctgaagaat
gtgaaatacgaattgaagcagttggaggggttttcagacagaattctggagttggagcag
gagatcgtcaagacagaaaaggagctggagaagactgagaggagtagcagtgtagaaaaa
ctggaactggaagtgcagactctgcaaaatgagaaaataaacctggacaaagctcttagg
aagctggatcaagagattgaacaattgaatctacataccacgacaattacccaaatggag
atgctgaagaaagacaaagtagacaaagaagagcagatcagaaaagtaaaagcaagacat
tctgatgaactgacatcactgctgggatactttccaaataaaaaccaacttgaagactgg
cttcatagtaaaaataggaagataaatcagacaagggataatcttgctggccttaacaaa
cggctggtgtcagtagaatatcaaaaaacttacgtcagcaatgagctgcgaaacaaagaa
gagcagttgtcccttcatgaagcaaaactcttcgatgtctgtggaagccaagactttgac
agtgatctggacaagcttcaagatgaaattgagaaaagctcaaaacagcgagccgtgctt
gcgggagccactgcagtctattcccagttcatcacgcagctgacagaggagaaccagagg
tgttgtccagtttgtcagagagcatttcaaacagaggccgatctgcaagatgtcatcagt
gatctgcagtctaagctgcgtcttgctccagacaaactgaagtcaacagagtctgagctt
aaaagaaaggagaagaaacgtgatgaaatgatgagtcttaaaccactgaggcaaactgta
gttgaactccaagcaagggacataccaaacttgaggaacaagatacagaatgcaaacagg
gatttgacaggcctgaagggcgagatagaagaacaggaatcactcttgcagacagctttg
tctgaggaggaaggtgccaaggcatgtttacaggatataactctaatggaaaggtaccag
actgatattagggatgttgaacgtaaaattgctcagcaggaggctaagctgctaggggtc
gatttaagtaggactgttctacaagtaagccaagaaaaacaagagaaaaagcacttgtgg
gatacagttactggtaaaattgagttaaaccagaaactgaagcaagaccagcaaaatcag
atccagcagctgaagagcaccgttaatgagcttaaagcagagaaacttcagattttcagc
agcatgcagcgtcggcgccagctggaggaacaaacagtggaattaaccactgaggttcag
gacttatgcagagagatcaaggaagcaaaagaacaggtatttcctttggatgcaacttta
gaaaagctgcagcaggagaaggaggaactggtgaataaaaggactacaagtaataaagaa
acacaggataagatgaatggcataaatgagaaagttaaagatatcaacaagtacgtgaaa
gaaatcgaaaactatattcaacaaggaagagatgactataaaaagcaaaaggagtctgaa
cttaatgaagtaaattcacagttagctgactgtgagaaacagaaggaaaagataagtaaa
gagatggaaacgattcgacaggatattgacactcaaaaggtacaggaaaggtggctggag
gataatcttactttgaggaaacggaatgaagagctaaaagatgttgaagacaatataaaa
cgacttgtgagggagatgggagaaatgaaagtcctggaaatgaaaaatgaacagaaacag
ctagaggagaaaatagaatctctgaaaagaaaccatcatgttgcccttggtcgacagcgt
ggatttgaggaggagattgtccggttcaaaaaggaacttcgagagccacaattcaaagat
gcagaggaaaaatacagggacatgatgattgtcatgagaacaacagagctagtgaacaaa
gatctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaag
atggaagaaatcaacaaaataattcgggaactttggcgaagcacctacagaggacaagat
attgagtatatagaaattcgttctgatgcagatgagaatgtctcagcctctgataaaaga
agaagttacaattacagagtagtaatggtaaagggcgatacagcactggatatgcgagga
agatgtagtgctgggcaaaaggtgcttgcttctcttattatccgtcttgctctagcagaa
acattctgtctcaactgcggcatattggcacttgatgagcctactaccaaccttgatcga
gaaaacatcgagtctcttgcccatgccctcatggagataataaaaagccgctcacaacag
cgtaactttcaacttctggtgataactcacgatgaggattttgttgaacttctggtccgt
tctgaatacgtggagacgttctacaggataaggaagaacattgaccagtgctctgagatc
atgaaatgcagtgccagttccctgggctcgtacgttcattag
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integrated database retrieval system
