Strigops habroptila (Kakapo): 115615656
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Entry
115615656 CDS
T08851
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115615656 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115615656 (CNOT6)
Enzymes [BR:
shab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115615656 (CNOT6)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115615656 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115615656 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
115615656
NCBI-ProteinID:
XP_030359929
UniProt:
A0A672U702
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All DBs
Position
12:12280038..12313621
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AA seq
557 aa
AA seq
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MPKEKYDPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWTLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGMEKQLVLVANA
HMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPPVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctca
gaggaagcagccaacggaaagaaatcacactgggcagagttggaaataagtgggaaagtg
agaagcctaagttcgtcattgtggacactgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcctctaataaaattcgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactacatttaaataacaacctgttacgagttttaccttttgagctggggaaactgttc
cagttacagactttgggtctgaaaggaaatccgcttacacaggatattctgaacctttat
caggaaccagatgggacgcgcaggctactgaactatttgcttgataatttggcaggtact
gcaaaaagaatttcaactgaacaaccacctccaagatcttggattatgttgcaagaacca
gaccgtacaagaccaacagccttgttctctgtcatgtgttacaacgtactctgtgataaa
tacgctacccggcagctgtatggctattgtccatcttgggccttgaactgggaatacaga
aaaaaagccattatgcaggaaatcctgagctgcaatgctgacatcataagtcttcaggag
gttgaaacagagcagtactacagttttttcctggtagaattgaaagaacgtggctacaat
ggattcttcagtccaaaatctagagctaggacaatgtccgaacaggaaagaaaacatgtt
gatggttgtgcaatatttttcaaaacagaaaaatttactttggttcaaaaacatactgtt
gagttcaatcaactagcaatggcaaactcagaaggttcagaagctatgctgaacagagtt
atgacaaaagataacattggagttgctgtattgttagaactgcgaaaggaattgatagaa
atgtcatctggaaagccacaccttgggatggaaaagcagctagtgcttgtagctaatgca
catatgcattgggacccagattattctgatgtgaagctggttcagactatgatgttcctg
tccgaggtaaagaacattattgataaagcttctcgtagtctcaaacctggtgtttcggga
gagcttggaaccattccacttgtactgtgtgcagatctcaattccctaccagactctggt
gttgttgagtacttgagcactggtggagtggaaacaaaccacaaagattttaaggaactg
agatacaatgaaagtcttactaacttcagctgcaatggaaaaaatggaacaacaaatgga
agaattacacatggtttcaagttgaagagtgcctatgagaatggtctaatgccttataca
aattacacatttgacttcaagggtattattgactacatcttctactctaaacctcagcta
aacatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggttgtccacatccactcatcccttctgaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcctcctgtaaatggaatccatctccctggcaggaggtag
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