Strigops habroptila (Kakapo): 115615840
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Entry
115615840 CDS
T08851
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
115615840 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shab01009
]
115615840 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shab04515
]
115615840 (PCDH1)
Protein phosphatases and associated proteins [BR:
shab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115615840 (PCDH1)
Cell adhesion molecules [BR:
shab04515
]
Cadherins
Protocadherins
115615840 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
115615840
NCBI-ProteinID:
XP_030360336
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All DBs
Position
12:21864664..21924604
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AA seq
1225 aa
AA seq
DB search
MQTPLDQRARGQHGAQRRPHPTPLQHRMKPLASYLGLWLLFQLPALVSGTRVVYKVQEEQ
PPNTLIGSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLP
GDPCFLEFEVSITDLILNSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFP
IPLAMDRDSGPNGVASYELTAGPEAQELFGLQVAEDQDEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPVGHSVLQVKANDSD
QGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDVNILKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVMDVNDNAPVFSQSFTEVAFPENNEPDDLVMEVSASDADSGSNAKLVYSLVTD
PSSKGSFAIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVAVNVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGVNAELIYSITGGNPFELFQISPHSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KNKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSSQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgccgctggatcagcgcgcaaggggccagcacggagcgcagcgccgtccgcat
ccaactcccctgcagcacaggatgaaaccgctggcatcctacctgggcctgtggctcctc
ttccagctccctgctctggtctctgggacacgtgtggtctacaaagtgcaggaggaacaa
ccccccaacaccctcatagggagcctagcctctgactatggcttcccggacgtggggcac
ctctacaagctggaagtgggggctccatacttacgtgtggatggcaagactggggacatc
tacacaacagagacctccatcgaccgggagagcttgcgtgagtgccagcacctcctgccc
ggagacccctgcttcctggagttcgaagtgtccatcactgacctgatcctgaacagcagc
ccacgcctgctcgaggggcagatagaggtgctcgatatcaatgacaacacccccaacttt
gcctcgcccgtcctcaccctctccatccctgaaaacaccaacatcgggactctcttcccc
atccccctggccatggaccgggactcgggccccaacggtgttgcctcctatgagctgacg
gctggtccggaggcgcaggagctctttgggctgcaggtagcagaggatcaggatgagaag
cagccacagctgatcgtcatggggaatctggaccgggagcagtgggactcctatgatctg
accatcaaggtgcaggatggaggcaacccaccaagggcgagcagcgccctgctgcgcatc
accatcctggacatgaacgacaacgcgcccaagttcgagaaggccctgtatgaggcagag
ctctccgaaaacagccctgtggggcactcggtcctgcaggtgaaagccaacgactcggac
cagggcgccaatgccgagattgactactccttccaccaagcctcagacatggtgcggcgg
ctgctgcgcctggaccgcgccacggggctcatcaccgtgcaggggcccatcgaccgagag
gacgtcaacatcctcaagttctccgtcatggccaaggacaagggggccaaccccaagagc
gcccgcacccaggtggtggtcaccatcaaggacatgaatgacaacgcaccctccatagag
attcggggtatagggcttgtcacccaccaggatggcatggccaacatctcggaggacgtg
ccagtagagacagcagtggctctggtacaagtgtccgaccgagatgagggtgaaaacgct
gtggtgacctgcgtagtggcgggtgatgtcccgttccagctgcggcaggctagtgaaaca
gggagtgacagcaagaagaaatacttcctgcagaccaccacgcctctggactatgagtca
gtgaaggagtacaccattgagatcgtggcggtggactcagggaacccgcctctctccagc
accaactctttgaaggtgcaggtgatggatgtcaatgacaatgcgcccgtcttcagccag
agcttcactgaggtggcattccccgagaacaatgagcccgatgacctggtgatggaggtg
agtgccagcgatgctgacagtggctccaatgccaagctagtgtactccttggttacggat
ccctcctccaagggatcctttgccattgaccctgactctggggagatccgggtgaaggcg
gtgctggaccgagagcagcgggagcgttatgagttcttggtggtggcagcagacaagggc
agccccagcctcaagggcacagcatctgtggccgtcaacgtcatggacaggaacgacaac
gaccccaagttcatgctgagtggctacaacttctcagtgatggagaacatgccacccctc
agccctgtgggcatggtgacggtgattgatgctgacaaaggagaaaatgcccgcatccag
ctgtcagtggagcaagacaacggggattttgtcatccagaatggcactggcaccattctc
tccagcatctcttttgaccgggagcagcagagcacatacactttccgactcaaggcggta
gacggtggggatcctcccaggtctgcctacgtgggggtgaccatcaacgtcttggatgag
aatgataatgcccccttcatcacttcaccctccaatgccacctacaaacacatcctgccc
cacaccagccctggccagcaggtgagcaaggtgaaggcagaggacattgactctggtgtc
aatgcagagctgatctacagcatcacaggaggcaaccccttcgagctcttccagatctcc
ccgcacagtggggacatcaccctggagaaggagatcctgcgcaagcaccatggcctgcac
cgcttggtggtgcgcgtcaacgacaagggcaagccctcgcggcacggcacggcgctggtg
cacttctacgtcaacgagacgctggccaaccgcacgctgctggacacgctggtggggcac
agcctggacaccccgctcgacatagacattgctggagaccccgaatatgagcgcagcaaa
cagcgaagcaacatcctcttcggagtcatcgccggcatcgtggccgtcaccctggtcatc
gtgctggtcgtcctggtgcgctactgccggcagcgggaggccaagagcggctaccaagca
ggcaagaaggagaccaaggacctatatgcacccaagcaggccagcaagagtggtaagagc
aagaacaaggtgaagaagagcaagtctccaaagccacccaagcccacagaggatgaggag
gagacggggctgcagaaatcactcaagttcaacctcatgaacgactctgtcagcgacagc
ccccgaatccacctgcccctcaactaccctccgggcagcccggacctgggtcgccactac
cgctccaactcgccgctgccctccatccaactgcagcctcagtcgccctctgcctccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcgacgggctccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggac
ctgcaggatccctcccagcacagctactacgacagcgggctggaggagtcagagaccccg
agcagcaaatcatcgtcagggccccgcattgggccactggccctgcctgaggaccactac
gagcgcaccacacccgatggcagcatcggggagatggagcaccccgagaacgatctccgg
cctctgcccgatgtagccatgactgggacctgtacccgggagtgcacagagttcggccac
tccgatacctgctggatgcccggccagtcctcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaatggc
agccccagactctcagaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccagccagccaccaccccctcatcccagaccaccaag
agggagatctacctgtga
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