Strigops habroptila (Kakapo): 115616197
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Entry
115616197 CDS
T08851
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115616197 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shab03000
]
115616197 (ARID1A)
03021 Transcription machinery [BR:
shab03021
]
115616197 (ARID1A)
03036 Chromosome and associated proteins [BR:
shab03036
]
115616197 (ARID1A)
Transcription factors [BR:
shab03000
]
Eukaryotic type
Helix-turn-helix
ARID
115616197 (ARID1A)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115616197 (ARID1A)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115616197 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
115616197
NCBI-ProteinID:
XP_030361062
UniProt:
A0A672UZL2
LinkDB
All DBs
Position
12:complement(4574343..4634208)
Genome browser
AA seq
2282 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPSELKKAEAQQRDCPPEEAGGEAAAERGGGGGEKQAESEGPTG
KELQDGAESNGGGAGAESDLKSSNGNPGPRPAAAAATLNNNLPEPPGGGGSSDGVGAPQQ
QPPPQQPPPSHPAALPPPAYGFGQPYGRGAQAAAAAAAAAAAAFHQHGGQQSPGMAALQS
GGLEQSYPGPAGAPAGPPPPQNSHGGAEHGFPNHQYNSYYAAGAGRSAGSYPPPPQAYAL
SSPRGSTQSSAPAAAGAKSPAAAAFQQQRFGVMGPSAAGGAGGGGGATPQPTATPTLNQL
LTSPSSARGYQGYPGGDYSGGPQDGGAAAKGPAAAEMVSQYGAGSSQGWAAAAGGAPPRS
HHAPMSPGSSGGAGGGQSLGRSQQPSSPMDQMGKMRPQPYGGNNPYTQQQGPQAGPQQGH
GYPGQPYGPQTPQRYPMGMQSRTQSTMGSISYAQQIPPYGQQGPSAYGQQSQTPYYNQQS
PHPQQQQPPYSQQPPSQTPHSQPSYQQQQQPQSQPPQLQTSQPAYSQQQSQPPHQQSPTP
YPQQQSSAQQHQQSQPPYSQQQSQSPYQQQQQSQQTASSALSQQSSSYPQSQPQQQQSAY
SQQRFPPPQELSQDSFGSQASSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGT
EGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGP
LSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSP
RQSSGGQMHAGMGPYQQNSMGSYGPQGGQYGPQGGYPRQPNYNAMSNANYPSPGMGGSMN
PMGAGSQMHGQTGVPPYTGLPPGRMSHATMGNRPYGPNMANMPPQVGTGMCPPPGGMNRK
AQEAAAAAMHAAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGG
NMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKAESKSKKSSSSTTTNEKITKLY
ELGGEPERKIWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKK
WRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQTKIQP
PSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFAD
GSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSGQGPN
SGMGDPYNRAAGPGMGNMAMGQRQHYSYGGPYDRVRTEPGMGPEGNLATGTPQPNIMPST
PESGMYSPSRYPQQQQQQQQRHDSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKRPMD
GSYGPPAKRHEGEMYNVPYSAGQGQTQQQLPPAQSQQPSQQQTAQPSPQQDLYNQYGSTY
PAADRRAAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQSTPEGPQQGAMWQG
RNEIGYSYPNRQSTGSAPQGPAYHGVTRTDDILHSDQRVNHEGPWPSHGNRQPPYGPSAP
VPPMTRPPQSNYQTAPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPV
PASHITPAAVQPPMIRRDITFPPGSVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPG
QRTLLDPERFCKSSASSPEEGEEDDEPRSLNCEEEDEDEEEEEAAFSSKDKVPLESSEEK
LVSKFDKLPVKVVQKNDPFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKTE
LPLAHKRASCTSVLRKRSAAESNPSTREGETPPSDSSSEKRITATMDDMLSARPGALAGE
EEEVKALETAKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCIC
VSNIIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSC
NKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPF
PTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVC
REMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLMHMQNPPF
ESTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIG
QS
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccatccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggtgaggcg
gcggcagagcgcggcggcggcggcggcgagaagcaggcggagagcgagggccccacgggg
aaggagctgcaggacggggccgagagcaacggagggggcgcaggggccgagtccgacctg
aagagctcgaacgggaacccgggccccaggcccgccgctgccgccgccaccctgaacaat
aacctcccggagccgcccggtggcggcggcagcagcgacggggtgggggcgccgcagcag
cagccgccgccgcagcagcctcccccttcccacccggccgccttgcccccgccagcctac
ggcttcgggcagccctacggccgcggtgcccaggctgctgccgccgccgctgcggccgcc
gccgctgccttccaccaacatggcggacaacaaagccctggcatggcagcgctgcagagc
gggggcctggagcagtcctacccggggccggcgggagcccccgcggggccgccccctccc
cagaactcgcacggcggcgccgagcacggcttccccaaccaccagtacaactcctactat
gcggccggggccgggcgcagcgccggttcctacccgcctcccccccaggcctacgccctg
agctccccccggggcagcacgcagagctccgctccggcggccgccggcgccaagtccccc
gcggccgccgccttccagcagcagcgcttcggggtcatggggccctcggccgccggcggt
gcaggaggaggagggggagccaccccgcagcccacggccacccccaccctcaaccagctc
ctcacctcccccagctccgcccgcggctaccaggggtaccccgggggcgactatagcggc
gggccgcaggacgggggagccgccgccaagggcccggccgcggcggagatggtctcgcag
tacggcgcgggcagcagccagggctgggccgcggcggccggcggggccccgccgaggagc
caccacgcgcccatgagccccgggagcagcggcggagccggcggtggacagtccctcggc
aggagccagcagccttcgagcccgatggatcagatggggaagatgaggcctcagccgtat
ggaggaaacaacccgtacacacaacaacagggacctcaggcggggccgcagcaaggacat
ggctatccaggacagccctatggaccgcaaaccccccagagatatcccatgggaatgcaa
agcaggacgcaaagtacaatgggcagcatctcatatgcacagcagattcctccttatgga
cagcagggccccagtgcatatgggcagcaaagccagactccgtattacaaccagcaaagc
cctcatccccagcagcagcagcctccatactcccagcagcctccatcccagacccctcac
tctcagccttcttatcagcagcagcaacagcctcagtctcaacctccgcagcttcagaca
tcgcagcctgcctattcccagcagcagtcccagccgccccatcagcagtccccaactcca
taccctcagcagcagtcctcagcccagcagcatcaacagagtcagcctccctactcacag
cagcagtcacagtcgccctaccagcagcagcaacaaagtcagcagacagcttcctcggct
ctttctcagcagtcatcttcataccctcagtcacagccgcagcagcagcagtctgcatac
tctcagcaacgcttccctcctcctcaggagttatctcaagactcatttgggtcccaggca
tcgtctgctccctcaatggcttccagtaaagggcaagaagatatgaacttgaatcttcag
tccagaccttctagcctgccggacctgtctggttcaatagatgatctacccatgggtaca
gaaggagccctgagtcctggagtaagcacatcagggatttccagcagtcaaggagagcag
agtaacccagctcagtctcctttctctccacatacctctcctcacctgccaggcatcaga
ggaccctccccatccccagttggctctccagctagtgttgctcagtcccgctctggtcca
ctttcacctgctgcagtaccaggcaatcagatgcccccccgaccgcccagtggccagtcg
gacagtatcatgcatccttccatgaaccagtcaagcatagcgcaagatcgaggttacatg
cagaggaaccctcagatgccccagtacagctcaccccagcccggctcagccttatctccc
cgtcagtcctctggaggacagatgcatgctggaatggggccgtaccagcagaactccatg
ggaagctatggaccccagggtgggcagtacggacctcaaggaggttatcccaggcagcca
aactacaatgctatgtccaatgccaactaccccagtccaggaatgggaggaagcatgaac
cccatgggagcagggagccagatgcatgggcagactggtgtgccaccgtacactgggctt
cctccaggcaggatgagccatgcgaccatggggaacagaccttatggacccaacatggcc
aatatgccacctcaggtggggacagggatgtgccccccaccaggaggcatgaatcgcaaa
gcacaagaagcggctgctgccgccatgcatgctgctgccaactccatccagaacaggcct
cctggttatcccaacatgaatcaagggggaatgatgggcactggacctccttatggacag
ggaattaacagtatggctggcatgataaacccccagggcccgccctatccgatggggggg
aacatggccaacaactctgcagggatggcagcaagccccgaaatgatgggtcttggggat
gtcaaattaacacctgcaactaaaatgaacaataaggcagatgggacgccaaaagcagaa
tccaagtcaaagaagtccagttcctctactacaaccaatgagaagatcaccaaactctat
gagctgggtggtgagcccgagaggaagatctgggtagatcgttacctggcctttactgag
gagaaggccatgggcatgacaaatctgccagcagtaggcaggaaacccttggacctttac
cggctctacatctcagtgaaggagattggaggattgactcaggtcaacaaaaacaagaaa
tggcgcgagttagccacaaatctcaacgtgggcacatccagcagtgcagctagctctttg
aagaagcagtacatccagtgtctctatgccttcgagtgcaagattgagcgaggtgaagac
ccccctccagatatctttgcagctgccgattcaaagaagtctcagactaagatacagcct
ccatctccagcgggttcaggctcaatgcagggtcctcagacacctcagtccaccagcagc
tccatggcagagggaggagacttgaagccaccaactccagcatctacgccacacagtcag
atgcctcctttgccaggcatcaggagtaactcagtgggccttcaggatgcctttgcagat
ggtagtgatcctacgttccagaaacggaactccatgactccaaatccagggtaccagccc
agcatgaatacctctgacatgatgggtcgcatgtcttatgagccaaataaagatccttac
agcagtatgaggaaagctccaggaagcgatcccttcatgtcctcagggcagggccccaac
agtggtatgggtgacccttacaatcgtgctgcaggtccagggatgggtaacatggccatg
ggacagcggcaacactattcctacggaggtccttacgacagggtgaggacggagcccggc
atgggacctgagggcaacttagccacgggaactccgcagccaaacatcatgccttccacc
ccagaatcagggatgtactctcccagccgctacccacagcagcagcagcagcagcagcaa
agacatgattcctatggcaatcaattctccactcaaggcacatcctcgggcagccccttc
cctagccagcaaactaccatgtaccaacagcaacagcagaattacaagcggccgatggac
ggcagctacggtccccccgcgaagcgacacgaaggggagatgtacaacgtaccgtacagc
gccgggcaggggcagacacagcagcagctgcctccagcacagagccagcaacccagccag
cagcaaactgcacagccgtctccacagcaggacctgtataaccagtatgggagtacatac
cctgctgctgaccgccgcgctgccggagggccacagaaccagttcccattccaatttggc
agagacagggtctcggctcccccaggctccaatgctcagcaaaacatgcctcctcagatg
atgggtggtcccatacagtctactccagagggcccacagcaaggtgccatgtggcagggg
cgcaacgaaatagggtacagctatccgaaccggcagagcacgggctctgctccccagggg
cctgcttaccacggagtgactcgaacagatgacatcctgcattcagaccagagggtcaac
catgagggaccatggccttcccatgggaaccggcaacctccttatggtccctctgccccc
gtgcccccaatgaccaggcccccccagtctaactaccagaccgcccctagcatgcagaat
cacattcctcaggtatccagcccagcacctctgcccagacctctggagaatcgcacttct
cccagtaaatctccattcctgcactcggggatgaaaatgcagaaggcaggaccgccagtc
cctgcctcgcacataacaccagcagctgtacagcctcccatgatccgacgagacatcacc
ttccctccgggatcagtagaagcaacgcaacctgtgttgaagcagaggagacggctgaca
gcaaaagatatcggaactcctgaagcctggagagtgatgatgtctctgaagtctgggctg
ctagctgaaagtacgtgggccttagataccataaacatcctgctctatgatgacaacagc
ataatgaccttcaacctcagccagctgccaggcttgctggaactcttggtggagtatttc
cggcgctgcctgatcgagatctttggaatcctgaaggaatacgaggtgggagacccaggg
caaagaacactattagaccccgaaaggttctgcaaatcttcagcttcctctcctgaagaa
ggggaggaggatgatgaaccacggagcctgaactgtgaggaggaagacgaggatgaggaa
gaggaggaggccgcgttttcgagcaaggacaaagtacctctagagagcagcgaggagaaa
ctagttagtaaatttgacaagcttccagtcaaggtggtgcagaaaaacgacccgtttgtg
gtagattattcagacaagttggggcgggtgcaggagttcgagagcgggctgctgcactgg
cggatcggcggcggcgacaccaccgagcacatccagacccacttcgagagcaagacggag
ctccctttggctcacaaacgagcttcctgcacctctgtcttgaggaaacgttcagcagct
gagagcaacccgagcactagggaaggagagactcctccatccgacagctcctcggagaag
aggataaccgccaccatggatgacatgctgtcggcacgtccgggcgccctggcaggggag
gaggaagaggttaaagctctggaaacggcgaaggaaagcagcaagtttccctttggcatt
agtccagctcagagccacagaaacatcaaaatcctggaggatgaacctcacagtaaagac
gagacacccctgtgcaccctcctggactggcaggactctctggcgaagcgctgcatctgt
gtctctaacatcatcaggagtttatcgttcgtgccgggcaatgactttgaaatgtcgaaa
catcccgggctgctgctgattctagggaagttgattctcttacaccacaagcatccagaa
cgcaaacaggcacccctgacctatgagaaagaggaggagcaggaccaaggggtgagctgc
aacaaggtggagtggtggtgggactgcttggagatgctgcgtgaaaatacactggtcacg
ttggccaacatttctggccagctggacctctccccttacccggaaagcatctgtttgcct
atcctggatggactcctccactgggcagtatgtccgtcagcagaggcccaggatcccttc
ccaacactggggcccaatgcggtcctctcccctcagagactggttttggaaacactcagc
aaactcagcatccaggacaacaatgtggatttgattcttgcaactccccccttcagtcgc
ttggagaagctgtacagcaccatggtgcggttccttagtgacagaaagaacccggtgtgt
cgagagatggctgtggtactactggccaacttggcacagggggacagcctggcagcaaga
gccattgctgtgcagaagggcagcattggcaacttgctgggctttttggaggacagcctg
gccgccacgcagttccagcagagccaggccagcttgatgcacatgcagaacccacccttt
gagtcgacgagcgtggacatgatgcgccgggctgctcgggcgctgctcgccctggccaag
gtggacgagaaccactcggagttcacgttatacgagtcgcggctgttggacatctccgtg
tcgcctttgatgaactctttggtttcacaagttatttgtgatgtactgtttttaattggc
cagtcatga
DBGET
integrated database retrieval system
