Strigops habroptila (Kakapo): 115616246
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Entry
115616246 CDS
T08851
Symbol
ARHGEF12
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04270
Vascular smooth muscle contraction
shab04625
C-type lectin receptor signaling pathway
shab04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
115616246 (ARHGEF12)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
115616246 (ARHGEF12)
09153 Circulatory system
04270 Vascular smooth muscle contraction
115616246 (ARHGEF12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115616246 (ARHGEF12)
Membrane trafficking [BR:
shab04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
115616246 (ARHGEF12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
AAA_23
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
115616246
NCBI-ProteinID:
XP_030361110
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All DBs
Position
17:2725841..2801861
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AA seq
1544 aa
AA seq
DB search
MSGTQSTITDRFPLKKPTRHGSILSRESPADKKQKVERCSSTHDFDPTDSSSKKTKSSSE
ESRSETYGLVQRCVVIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNG
TLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSEVDLAAFGHMSPIMTSPHSP
GASGNAERITSPVLVGEENNIVHNQKVEILRKMLQKEQERLQSLQEEYNRSPTTRLFKEI
QEAKKHIPQLQEQLSKATGCAQDGVLSSRSVTESLQISEVEAESGDCVSKLDYSGDSPSR
PNSDITDSPRSGLKERVYPDESPEKTEVQDTDSQSSVGSPLSRVVPQIIGAEDDDFDTEQ
EQINGQCSCFQNIELLKSRPAHLAVLLHHVVSQFDPAALLCYLYTDLYKQTNSKETRRVF
LEFYQFFLDRAANLKVPVPDEISLELDRRRPELLPEELHRQFIQTMQDKVCPEVQRNLED
FRQKRSMGLTLAEGELTKLDAERVRDRFAVEKERACAEQIIAKIEEVLMTSQPLEEDKSS
TMQYVILTYMKHLGVKVKEPRNLEQKRGRIGFLPKIKQSIKKEKEGEEKGKRRGFPNILG
PPRRPSRHDSSAIGRAMEMQKPRHLKHVPPASSVSPEPADSSKMRQSGSSSEGTDGPYPP
ANPMSPLAMGPFSSPEGSKDSETGLKQTGEAPPANDCMDGTPRTPNNTFEFPSPLENLQE
EEGESERMVDMGTPKPFRKMDSVGFTDVQSEDELYDFDMDMDPPNWQQLVSREVLMGLKP
YEIKRQEVINELFYTERAHVRTLKVLHNVFYQRVTREGILNSSDKRKIFSNLEDILGLHV
ALNDQMKAVRKRNETSVIGQIGEDLLSWFSGPAEEKLKHATATFCSNQPFALEVIKSRQK
KDSRFQTFVQDAESNPLCRRLQLKDIIPTEMQRLTKYPLLLDNIAKYTELPEEKEKVKKA
ADHCRQILNHVNQAVKESENKQHLEDYQRRLDLSPLKQSEDPMMDEFRNLDLTKRKMLHE
GPLTWKVNRDKTIDLYTLLLEDILVLLQKQDDKLVLKCHSKILASTADSKHTFSPIIKLN
TVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKNVWQDLIAQMAGTVKMGSTRRVI
RLPESGPGEEEREEEEQQKLKEQHDVPASSLQSPDKDSGLESPLILNAQSSSLIMSEKSK
VESLLASEGQFDKVQQADLTLKDSSACYEHTTTSLSSISEGQWALDALRNLGLLKQLLVQ
QLGFSEKGTLEDRQRFPRFRTVSQEGQTESGNEPGLQHPENNKFHQPGTDRALPRTATNE
STASYGLRTSAESPASGDAMQLMERDPRSSSNLAIDRMSMNLEISATELEGVGADESGEH
FFDAREAHSDENPSESELMERKEEEDVQIRISGNYLILDGYGTVQESSTDEEVSSLVLQC
TAGGRASLDSAQQQPLSPRDTQSDGGSSPFAEEMMASRWGAVEESCSFVASPHFSIESRV
QMMQYIQKIEDDLEKLKEVEEDYTILRRQGLAGSASTGEHSDKS
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtccacaatcacggacaggtttcctctcaaaaaacctacaagacac
ggcagcattctgagcagagagtctccagctgacaagaagcagaaggtcgaacgctgcagt
agtacgcacgactttgatccgacagatagctcctccaagaagacaaagtctagttcggag
gagagtagatccgagacgtatggtcttgttcaacggtgtgttgttatccaacgggatgaa
aacggttttgggctgacagtcagtggagacaatccagtcttcgtgcagtccgtcaaagaa
gatggagcagccatgcgggctggagtgcaaacaggtgatagaattatcaaggtgaatggc
actcttgtaacacactcaaaccatttggaggtggtaaagctgatcaagtcgggttcctat
gtagctctcactgttcaggggcgcccaccggggtcgcctcagattccattagctgattct
gaagtggatctggcagcgtttggtcatatgtctcccatcatgacatctccccattcgcct
ggcgcatcaggaaatgcggaaaggattactagcccagtgcttgtgggggaggagaataat
attgtccacaaccagaaggtggagattctgagaaagatgttacagaaagagcaggaacgg
ctgcagtctctgcaagaagaatataaccgatcacccaccacacgattgttcaaagagata
caggaagcgaagaagcacattcctcagctgcaagagcagttgtctaaagccacaggctgt
gctcaggatggagtcttatcctccaggtctgtgacggaatcgctgcagatcagtgaagtg
gaggcagagagtggggattgtgtgagcaagctcgattacagtggtgacagcccctcccga
ccaaacagtgacattactgatagtcctcgcagtggcttgaaggagcgggtttatccagat
gagagcccagaaaagactgaggttcaagatactgattcccagtccagtgttggaagtcct
ttatcccgagtggtgcctcagatcattggagcagaggatgatgactttgacactgaacag
gagcagattaatggacagtgcagctgtttccaaaacattgagctcctgaaatctcgccca
gctcacctggctgttcttctgcatcatgtggtatcccagtttgaccctgcagcgttgttg
tgctacctttacacagacttgtacaagcagaccaactccaaagagactcggcgtgtcttc
ctggagttttaccagttcttcttggaccgagctgcaaacctgaaagttccagttccagat
gaaatctccttagaactagacagaagaaggccagaactccttcctgaagagcttcatcgt
cagtttatacaaactatgcaagataaagtctgtccagaagttcaaaggaatctggaagat
ttcagacagaaacgtagcatgggattgaccctggcagaaggagagctaaccaagctggat
gcagagagagttcgtgaccggtttgcagtggagaaggaaagagcatgtgcagaacagatt
attgctaaaattgaggaagtcttgatgacatctcagcctttggaagaagacaagagttcc
acgatgcagtatgtgattcttacttacatgaaacacctgggagtcaaagttaaagaacct
cggaacctggagcagaagcgtggccgtattggtttcttgccaaagatcaagcaaagtatc
aagaaagagaaagaaggagaggaaaaaggaaagagaagaggctttcctaatattctgggc
ccaccaagaagaccgagccgacatgatagcagtgcaattggcagagccatggaaatgcaa
aagccccgccatctaaagcacgtacctccagcatcttccgttagcccagagccagcagat
tctagcaagatgcgccagagtgggtcctccagtgaaggaacagatgggccatacccacct
gccaacccaatgtctcctttggcaatgggtcccttttcttctccagagggaagcaaggac
agcgaaacaggtttgaagcagacaggagaagctccacctgctaatgactgtatggatggc
acaccccgcacacctaataatacctttgaatttccatctcctttggaaaacttgcaggag
gaggagggagaatcagagagaatggttgacatgggaacaccaaagccttttcgcaagatg
gacagtgttggtttcacagatgtacaaagtgaagatgagctgtatgattttgacatggac
atggaccctcccaactggcagcaactcgtgagccgagaagtgttgatggggctgaaaccc
tatgaaatcaagcgccaagaagtgattaatgaattgttttacaccgagagagctcatgtc
cgtacgctgaaggttctgcataatgtcttctaccagcgtgtcacccgggaagggatcctg
aactccagtgacaaacggaagatcttttcaaatctggaggatatccttgggcttcatgtt
gcgttgaatgatcagatgaaggctgtccgaaaaaggaacgagacatctgttattggccaa
attggggaagacttgctttcctggtttagtggaccagcagaggagaagctgaaacatgca
actgccactttctgcagtaaccagccctttgctctagaggtcatcaagtcacgccagaag
aaggactctcgcttccagacttttgtacaggatgctgagagtaatcccctgtgtcgacgg
ttgcagctgaaggatatcattcccacagagatgcaaaggttgactaagtacccccttctg
ctggataacattgctaagtacacagaactgcctgaagagaaagagaaggtgaagaaggca
gcagatcattgtcgtcagatccttaaccacgtgaaccaggctgtcaaagagtctgagaac
aagcagcatttggaagattaccagcgtcgtctcgacttgtcacccttgaaacagtctgag
gatcccatgatggatgagttcaggaacttggatctaacaaagagaaaaatgcttcacgaa
ggacctctaacttggaaggttaatcgtgacaaaactattgatctctacactctgcttctg
gaggacattctggtgctgttgcagaaacaagatgataaactggtactgaagtgtcacagt
aaaatcttggcatcaacagctgacagtaaacacaccttcagccctatcatcaaactgaac
actgttctggttcgtcaggtggcaacagataacaaagctttcttcgtcatctccatgtca
gaaaatggcgctcacatttatgaactggtggcacagactgtgtcagaaaagaatgtatgg
caggaccttatagctcagatggcagggaccgtaaaaatggggagtaccagaagagtaatt
cgattaccagagtcaggacctggcgaagaagagcgtgaagaagaagaacagcagaagctc
aaagagcagcatgatgttcctgccagtagtctacaaagtccagataaagattcgggcctc
gaatctcccttaatactgaatgctcagtcttcttcactcatcatgtctgaaaagtccaag
gtagaaagtcttcttgcatcagaaggacagtttgataaagtgcagcaggcagacctgaca
cttaaagattcttctgcatgctatgaacacacaaccaccagtttatcttccatatcagaa
gggcagtgggcattggatgcgttaaggaacttgggcttgctgaagcagttgttggtacag
cagcttggcttctctgagaaggggaccctcgaagaccggcagcgctttcccaggtttagg
accgtttcccaagaaggccaaacggagagtggaaatgagcctggactgcagcaccccgag
aataacaaattccaccagcctgggacagacagagcgcttccaagaaccgcaactaatgag
tctacagctagttatggcctccggacttcagctgaatcgccagcttcaggagatgccatg
cagctgatggagagagaccccagatcgagtagtaacttagcaatagaccgcatgagtatg
aatctggagatctcagccacggagctggaaggggtgggtgctgatgaaagcggggagcat
ttttttgatgctcgagaagctcacagcgatgaaaatccatctgaaagtgaactaatggaa
aggaaggaggaagaggatgtgcaaatacggatctcaggaaattatttgatcctcgatgga
tatggaacagtgcaggagagctccacagacgaggaggtatcgtctctagttctccagtgc
accgcaggtggccgcgcctctttggactctgcacagcagcagccactttccccacgggac
acccagtcagatggaggaagctccccgtttgctgaggagatgatggcttcacgctgggga
gcagtggaagagtcctgctcgtttgtagcaagccctcacttctctatagagtcgcgtgtg
cagatgatgcagtatattcagaagatagaggatgaccttgaaaagttaaaggaggttgag
gaagactacaccattctccgacgccaagggctggctggatcagcctccacaggagaacac
tcagacaaaagctag
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integrated database retrieval system
