Strigops habroptila (Kakapo): 115617023
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Entry
115617023 CDS
T08851
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115617023 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shab03041
]
115617023 (PRPF4)
Spliceosome [BR:
shab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115617023 (PRPF4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
115617023
NCBI-ProteinID:
XP_030362896
UniProt:
A0A672U6X7
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Position
15:10489125..10496920
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AA seq
536 aa
AA seq
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MASARAPAARGGARPPVRAPAPAEATKTKPAEESDAPPAKRAPIFYGSLEEKERERLAKG
ESGLLGKEGMKAAIEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDS
EVKACLRALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSREEYQQTW
YHEGPRSLKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCS
QIGDDRPLSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKAT
VSLDKKDVNLASCAADGSVKLWSLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHS
WRLWDLEAQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGH
LKEIYGINFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFLL
TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgctcgggcaccggcagcgcggggaggcgcccgcccgcccgtgcgggccccc
gcgcccgccgaggccaccaagaccaagcctgcagaagagagcgatgctcccccggccaag
agagcccccatcttctatggcagcctggaagagaaggagagggagcgtctggcaaagggg
gagtcggggctgctggggaaagaagggatgaaagcggcaatcgaggctggcaacatcaac
attagcagtggtgaggtctttgaccttgaagaccacatgagtgagcgtcaggccgaggtg
ctggcggagttcgagcgcaggaagcgggcccggcagatcaacgtctccactgatgactct
gaagtcaaagcctgtttgcgggcgcttggggagcccatcaccctctttggagaaggtcct
gcagaaaggagggagaggttaaggaatatcctttccgtggttggcacagacgcattaaaa
aagaccaggaaagatgacgacaggtctaaaaagtccagagaagagtatcagcaaacctgg
taccacgaaggaccgcgcagcctgaagacagcgcggctctggctggcgaactactcactc
cccagggcagcgaagcgcttggaagaagcccgattgctcaaagagatcccagaggcaacc
aggacgtcgcagaggcaggagctacacaaatccctgcggtccctgaacaacttctgcagc
cagattggagacgatcgcccgctgtcctactgccacttcagccccaattccaaactcctc
gctactgcctgctggagtgggttgtgcaagctctggtccgtacctgactgcaaccttgtc
cacaccttacgaggacacagcaccaatgtaggagcaatagttttccatcccaaagccact
gtctctctggacaagaaggatgttaacctggcctcgtgtgcagctgatggttctgtcaaa
ctctggagccttgaaagtgatgaaccagtggcagatattgaaggacacagcatgagagtg
gcacgtgtgatgtggcacccgtcaggccggttcctgggtaccacctgctacgatcactcg
tggcgcttgtgggacctggaagctcaggaggagattctccatcaggaggggcacagcaaa
ggggtctatgacattgcctttcacacagacgggtcccttgcgggcactggaggactggat
gcttttggccgggtgtgggacttgcgcacgggacgctgcatcatgttcctggaaggccac
ttgaaggagatctatgggattaacttctcccctaatggataccacgttgcgactggcagt
ggtgacaacacatgcaaggtgtgggacctgcgccagaggaagtgcatctacaccattcct
gcccaccagaacctggtgaccggggtgaagtttgagcccaaccacggaaacttcctgctc
acgggcgcctacgacaacacggccaagatctggactcaccccggctggtccccgctgaaa
acactggctggtcatgagggaaaggtgatgggactggacatctccctcgatggccagctg
atagcaacctgctcctatgacagaaccttcaagctgtggacagcagagtag
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