Strigops habroptila (Kakapo): 115617042
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Entry
115617042 CDS
T08851
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115617042 (SETX)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115617042 (SETX)
5.6.2.5 RNA 5'-3' helicase
115617042 (SETX)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115617042 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
NAT10_TcmA_helicase
nSTAND3
ResIII
Motif
Other DBs
NCBI-GeneID:
115617042
NCBI-ProteinID:
XP_030362926
LinkDB
All DBs
Position
15:4630992..4660761
Genome browser
AA seq
2554 aa
AA seq
DB search
MSTCRWCTPSGPDATEFLKNYASKRLSPEDLEGSNEDLCYCLECVLEYHKAKEKLPALHE
VLWELETSRLVAHIEKSMQEEAGEDDELFLVDENGETQLSGYVGPDFENNLRVPLLEILK
YPYLLLHERVSELCVEVLCRMEESHSSFQVFEKYPGIYLFLVHPNEAIRRWAILTARNLG
KVDRDDYYDLQEVLTCLFKVIELGLFESRDIYSSSMIEKGKLILLPSHLYDTVNYKNYWL
GICMLLTVLEEQALDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQ
LGSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRGSFKRTKSEPESDYNDDMVTCSQIVYS
YNTEKPQKDTGWKTAICPDYCPNMYEDMQALVNMLQSAIGRDTRVHQSTFLWFIPFVQSL
MDLKYLGVAYIVEVIHYLCSEIKDILSERIQQCDKISEFFLLILVSIIELHRNKKCLHLL
WVSSQEWVEAVVKCAKLPAIAFTQCTEKLPGQYVRGSLTVSSQASNSVQHACVQLIRSLL
REGYHIGQHALCKQYLDKLNLLLRGNLSLGWQLNIQETQELQVCLRQVIRGIKNRALDTS
VAVGNSANSTTLPAISIKQEKNARGGGCELSVYDRDDPHSLCAVSSKEGRDCSSFFKSDP
GMQGNEDDGIVLSGFSGTSLKKVSTGLKLSSLLKSKIKKEPDMQTSDWEQPNLNDSAKYN
CEGQISKSYCMDKTSANDRVPSSSENKNSISNPASWTRPLSVKCESSDRLLEFSKYFKRE
SNSVGKKEEDFVKTVSEDNTLTDSQVDRELSKLSLAAYAKGVNFPFDSSQESPLHDNVCD
IKRKVKGAVRSSSDGQSTTSPCSADCRNNKVIIISDSSDDENSVAEEKETEKKNENGYPE
KQPSTSSCISDSDTKTESKVPSSPLSLENCESQYFEFETELDVFSVWQDTQDYSMEVTQE
YKQGHVSTSVDSRDSGELVDDETNEWGYDVDYINDDNMEEEANLTGKETENVSLQTEADN
TKVVTNSTLQESVSKENAKDQLENSAGKGTVAEDFTLHSKLTEPRASTSKISLASKLALK
KNSASPQKSIANSKVARTIQRSPKKTPVLKPAQNKKLLQSTSKNSQPGRSLPAVVPPRKV
RQCPAPASTVEKLGLKKAPRKAFELSQRSLESLAQLRSYGKAAGRVGVAQKKKIKLIAPQ
SLSIKHNKKLLACQDLQYLRQTRPKRRVGVGNSAGSSGSRNKKVSKLDAKSMKQKPGSFE
VASVEKQGERKREQTGFPSAGEREFESLFVEEETGVSKMPSFSDLDRKSEDNGTTVPPVP
VFSSLSSAALVGDGKNEPSGKGSVVQPECEKIEENGCKSNENSDDDDLFLTQLDPVDMEL
CSEEENVQDTTAAGKNPEEMDTAESLQQSESSTIVKCKYKDCVEKVEKPGEYCRKHSATS
SEADHLFAKPSLLPPKPRKPSTTKIFSSASSSRNAAFSKDLEDVKKLPPASKSKVNAAKP
VVVRPPNAKPIPIRNQTCRSPSFTNVPQVNIPNNVLQSQNRQNDNASNISRRPVQEAYSS
PFYVQQRDYSIFISEVLRWTYEMFVNSSLFGPPSNLTQSVVASVPVHFQGYNDYFNTFFP
LMMLNAFETLAQEWIENQRIREKSYYFNLQNFSADLNTADFTAHLQESDLAKQLHPKEDD
LIFLVVQKKKDAFREESEMEDQIVNEVGLVTRFSRASGRSTRQKEQHTVCHLSVRTRGNL
SFFVNKQVKCMVVGSLVTTHRTFKGLLLLSRSPLAKPIINPSYNDFCPRDLLVASESAVW
NVNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEK
TQKTNSKIKPNRFLVCAPSNAAVDELMKKIIIAFKEKCQNRQEPLGNCGDIKLVRLGAEK
AINSEVRGFSLDKQVEHRMKRKPADCDQDIQKKKAALDQKLDMLSRQRAMHRCEKKEVSQ
MLDDEIGRLSKERQQLASQLKEVRGHSQKVQADIILESDIICCTLSTSGGSLLESVFFRQ
GLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPRQLPPTVKSVKAQEYGYDQSLM
ARLHRHLEEQVHKNVLRSLPVVQLTVQYRMHPDICLFPSNYVYGRTLKTDKATEENRCSS
EWPFQPYLIFDVGDGHEERDNDSFSNPQEVKLVMELIRTIKEKRKDLGLRRIGIITPYSA
QKKKIQEQLDRVFRNNSPGEVDTVDAFQGREKDCIIVTCVRANSTKGSIGFLASLQRLNV
TITRARFSLFILGRLKTLMENKDWNELIQDAQKRGAIIKTSEKNYRRDAGKILKLKPPVQ
PPANAGTKQPAPLQSSSSGKKPLANPKEASSPRELTAGTGSAALQGSGGPQQPQRAQAVD
SRRGSAPATMVAAVLPADQEKPRDPRLASMASRTEAKGKEQASKDSSRSAQSNPGSTSQQ
GLDVSSAARDQIARTETFKKPQQTPGQCESPSTPRHEGDWRAPPSKSSSKSHSEGGESYS
NKQNKDYCVLTRRTSEESPVNTESNGAKRRKTFH
NT seq
7665 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgtgtcgatggtgtacacctagtggtcccgacgccaccgagttcctgaagaac
tatgcttctaaacggttgtccccggaagatcttgaaggatccaatgaagatctctgttac
tgcctggagtgtgtgcttgaataccacaaagccaaggaaaaattgccagcgttgcatgag
gtcttgtgggagttggaaacctcccgtcttgttgcccacattgagaaatccatgcaagaa
gaagctggagaagatgatgagttgtttttagtggatgagaatggagagacacagctgtct
ggttatgtgggcccggactttgagaataacctgcgagtgccccttctagaaatactgaaa
tatccatatctgctgctgcatgagagagtcagtgagctgtgtgtagaagtgctctgtaga
atggaagaaagtcacagctcctttcaggtctttgagaaatatccaggaatttatctcttt
ttggtacacccaaatgaagcgattcgtcgatgggccattctaacagcaaggaatttaggc
aaggtcgacagggatgactactatgacttacaggaagtgctgacttgcttgttcaaagtt
attgagttggggctttttgagagtcgagatatttacagctcttcaatgattgaaaagggt
aaactcatccttctgccatctcacttatatgatactgtcaactacaaaaactattggcta
gggatttgtatgttgcttacagtgctggaagaacaagccttggactccttgttactgggt
ccagacaaacaaaatgatttcatgcagtctatacttcacaccatggagaaagaagcagct
gatgattctactgaccccttctggccagcgctgcattgtttcatggttattttggatcag
ctcggatctaaagtatggggtcagcttattgatccagtccaagcctttcaaaccattatc
aacagtgtgagctacaacaatgagataaaaaatatacgcggtagctttaagaggacaaaa
tctgaaccggagtcagactacaatgatgacatggttacttgcagtcagattgtgtatagt
tataacacagaaaagcctcagaaggatactggatggaagaccgccatttgtccagactat
tgccccaacatgtatgaagatatgcaagcactggttaacatgcttcagtctgcaattggt
agagatacacgtgtccatcaaagcacgtttttgtggttcatcccttttgttcagtcgctt
atggatttaaagtacttgggtgtagcatatatagtagaagtcattcactacctctgctcg
gaaatcaaagatattctcagtgaaagaatccagcaatgtgacaaaatctccgaatttttt
ctcctgattttggtctccattattgaactacacagaaataagaagtgcctgcatttgtta
tgggttagctcccaggaatgggtggaagcagtggtgaaatgtgctaagcttccagctata
gcatttacacagtgcactgaaaaactacctggacagtatgtgagaggttcattgacagta
tcttcacaagcttctaactctgtgcagcatgcctgcgtgcagttgatacgcagccttctt
agagaaggctatcacattgggcagcatgctctttgcaagcaatacctagacaaactcaat
cttcttctgcgaggaaatctatctttaggttggcagctgaacatccaggaaactcaggaa
ttacaagtgtgtttaaggcaagttataagaggtataaagaacagagcactggatacctct
gtggctgtaggaaacagtgcaaactctactactttacctgccatttctataaagcaagag
aagaatgcacgtggtggtggatgcgagttgagtgtatatgacagagatgaccctcattca
ctatgtgctgtctcatcgaaggaaggcagagattgttctagcttctttaaaagtgaccct
ggtatgcaggggaatgaagatgatgggattgtgctttcagggttcagtggcacctcactg
aaaaaggtatcgactggactaaaattaagttcattgttgaaatctaagattaagaaagaa
cctgacatgcaaacttcagactgggaacagcctaatttaaatgactcggctaaatataac
tgcgaaggtcaaatttcaaagtcctattgtatggataaaacttcagcaaatgatcgtgtt
ccatctagctctgaaaacaagaacagtatatccaaccctgcttcttggaccaggccactg
tcagtgaagtgtgaatcaagtgacaggttgttagaattttcaaagtatttcaagagggaa
agcaattcagtggggaagaaagaggaggattttgtgaagacagtttctgaagataatact
ttaacagactcccaggttgatagagaactcagtaaattatctttagctgcgtatgccaaa
ggtgtcaattttccctttgattcaagccaagagagcccactacatgataatgtgtgtgat
attaaaaggaaagtgaaaggtgcggtaagatcttccagtgatggtcagagtaccacgtct
ccctgtagtgcagattgccgtaacaataaagtcattataatttcagactcttctgatgac
gaaaactctgtggctgaggagaaggaaacagaaaaaaagaatgaaaatgggtatcctgaa
aagcagccttcaacttccagctgcatttctgatagtgacaccaaaacagaatcaaaggta
ccaagctctcccttgtcattggaaaactgtgagtctcagtactttgaatttgaaacagaa
cttgatgtcttttcggtttggcaagatactcaagactatagcatggaagtaactcaggag
tataaacaaggtcacgtttcaacgtcggttgacagtagagattcaggtgaattagtggat
gatgaaacaaatgaatggggttatgatgtggattacataaatgatgataacatggaagaa
gaagcaaacttgacgggaaaggagacagaaaatgtttctcttcagacagaagctgataat
acaaaagtagtaactaattcaacgttgcaagaatctgttagtaaggaaaatgcaaaagat
caactggagaattctgccggcaaaggtactgttgctgaagacttcaccttgcactcaaaa
ttgactgaacccagagcatctacatctaaaatctcattagcttcaaaattggcccttaag
aagaatagtgcaagcccacagaagagcatagcaaactctaaggtagcaagaactattcaa
agaagtcctaaaaaaactcctgttcttaaaccagcacaaaacaaaaaactacttcaaagt
acatcaaaaaattcccaacccggcaggtcactgcctgctgtggttcctccaaggaaagtt
cgccagtgtccagcaccagcatcaactgtagaaaaacttggtctgaagaaggcgcctcgc
aaagcgtttgagttatcccagcgctctttagagagtctggctcagttgcgcagctatggt
aaagctgcagggagagttggggttgcacagaaaaagaagattaaactaattgctcctcag
agtttgtctataaaacataataaaaaattgctagcctgccaagaccttcagtatttaagg
cagacaaggcccaaaagaagggtcggagtgggaaattctgcaggaagttctgggagtaga
aacaaaaaagttagcaaactggatgcaaaatctatgaaacaaaagcctggaagttttgaa
gtggcatctgttgaaaagcagggagagagaaaaagggagcagactggttttccctctgct
ggtgagagagaatttgaaagcctgtttgtggaagaggagacaggtgtctctaaaatgcct
agtttttcagacttggacagaaaatcagaggataatggtacaacggttcctcctgtacct
gtgttttcaagtctctcttctgctgcattggttggagatggtaaaaatgaaccttcagga
aaaggttccgttgtccagccggagtgtgagaagatagaagaaaatgggtgtaaatcaaat
gaaaatagtgatgatgatgatctgtttttaactcagttagatcctgtggatatggaattg
tgttccgaagaggaaaatgtacaagacactactgcagctggtaaaaacccagaggaaatg
gatactgctgaaagccttcagcagagtgaatcctcgactattgtgaaatgcaagtacaaa
gactgtgtagaaaaagtagaaaaaccaggagagtactgtaggaagcattcagccaccagc
tcagaagcagatcacttgtttgccaaaccttctctcctgccacctaaaccaagaaagcct
tccactaccaaaattttcagctcagcaagttcttcacggaatgcagccttcagtaaggat
ctcgaggatgttaaaaagctacccccagcttccaaaagcaaagtgaatgcagcaaaacca
gtggtcgtcaggccaccaaatgcaaagcctataccaataagaaatcagacatgcaggtct
ccaagtttcactaatgtacctcaagtcaatattcctaataatgttctccagtcacaaaat
agacagaatgacaatgcttcaaatatttccaggaggcctgtccaagaagcatattcttcg
cccttttatgttcaacagcgtgattacagtatttttattagcgaagtcctaaggtggact
tatgaaatgtttgtaaactccagcctctttggacctccaagtaatctcacgcagtctgta
gtagcctctgttcctgtccactttcaaggatacaatgactattttaatacatttttcccc
ttgatgatgctaaatgcctttgaaacactggcacaagagtggatagaaaaccagagaata
agagagaagagttactacttcaacttacagaacttttctgctgacttgaacacagcagat
tttacagctcatttgcaagaaagtgatttggcaaagcagcttcatccaaaagaggatgac
ttaatctttttggtggtccaaaagaaaaaagatgcctttagggaagaaagcgagatggag
gaccaaatagtgaatgaagttggtctcgtgacacgattttctcgtgcatctggccgttca
actagacaaaaggagcagcataccgtctgtcatctttctgtgcgaactcgaggcaatttg
tcattcttcgtaaataagcaagtgaagtgcatggtggttggctctctggtgaccacacac
cgaacattcaaaggtctgctactactgagcaggagtcccctggctaaacccatcataaat
ccaagttacaatgacttctgtcccagagatttgctggtagcttcagaaagcgctgtgtgg
aatgtgaatgaatacaatgaagatcaaaagagagctattgagacagcttatgccatggta
aagcaacatccagggcttcccaagatctgcctcatccatggaccacctgggacagggaaa
tcaaaaactattgttggacttctgtctcgtgttttgagagaaaacactaggaatgagaaa
actcaaaaaacaaattccaagatcaagccaaaccgttttcttgtttgtgcaccatcaaat
gctgctgttgatgaactcatgaaaaagatcatcattgcgtttaaggaaaaatgccaaaac
agacaggagcctttgggaaactgtggtgatatcaaattagtgcgacttggtgctgaaaaa
gcaatcaacagtgaagtccggggatttagcctggataagcaagttgaacataggatgaaa
cgaaagccagctgactgtgaccaggatattcagaagaaaaaagcagctctggatcaaaag
ctggacatgctgtctcgtcagcgtgccatgcacagatgtgagaagaaggaagtgagtcaa
atgttagatgatgaaattggcagactttcaaaggagagacaacagcttgcttctcaacta
aaggaggttcgggggcattctcagaaagtacaggcagatatcatcttagagtccgacatc
atctgctgcacgctgagcacaagtggaggaagtctgctggaatcagtgttttttcggcaa
ggacttgatcctttcagctgtgtcattgtggatgaggcagggcagtcctgtgaggttgaa
acactgattccactgatccatcgctgtaataaacttgtccttgttggagatcccagacag
ctccctcctacagtcaaatcagtgaaagctcaggaatatggctacgatcagtccttgatg
gcacgtctgcacagacacctggaggagcaagtgcacaagaatgttttgcgaagcctgcca
gttgtgcagctgactgtgcagtaccggatgcaccctgacatctgcctcttcccatccaat
tacgtttatggcaggactttaaagactgacaaagcaacagaagagaacagatgttcttca
gagtggccattccagccctaccttatttttgatgtaggagatggtcatgaggagcgagac
aatgactcttttagtaatcctcaggaggtgaagctggtgatggaattaattagaactata
aaagagaaaaggaaggatctgggtcttcgacgcattggaataattactccttacagtgca
cagaaaaagaaaattcaagaacaactggacagagtgtttaggaataatagcccaggagaa
gtggacacagtggatgcattccagggacgagagaaagactgcatcatagtgacatgtgtc
cgggcaaacagcactaaagggtcaattgggtttctggcaagtctccagcgtctgaatgtt
accattaccagagccagattcagcctctttatccttggaagactgaaaactctcatggaa
aacaaagactggaacgagttgattcaggatgctcagaaaagaggtgccattatcaagaca
tcagaaaaaaactacaggagagatgctggtaagattttgaagctcaagccaccagtacag
cccccagccaatgcaggaacaaagcaacctgctccgttgcagtcgtcttccagtggcaag
aagccacttgcaaatccaaaggaggccagcagccctcgggagctcactgctggcactggc
tctgcggcgctacagggaagcggaggaccccagcagccacagcgggctcaggctgtggac
tccaggagaggcagtgcccctgcaaccatggtggctgcagtgcttcctgctgatcaggag
aaaccacgggacccgaggctggcaagcatggctagtagaactgaagccaaagggaaggag
caggcctcaaaagacagcagtcggtcagcccagagcaatccaggatcaacatcacagcaa
ggccttgatgtgtcctcagctgccagggatcagattgccagaacagaaacttttaagaag
ccccaacaaacaccgggacaatgtgagtcgccttccacacctcggcacgagggtgactgg
agagctcctccttcgaaaagcagttcaaaatcccacagtgaaggaggtgaaagttacagc
aataagcagaacaaagactattgtgtgttaacaaggagaacatcagaagagtcaccagtg
aacacagaatcaaacggtgccaagcgaagaaagacctttcactga
DBGET
integrated database retrieval system
