Strigops habroptila (Kakapo): 115617306
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Entry
115617306 CDS
T08851
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shab04515
]
115617306 (CLSTN1)
Cell adhesion molecules [BR:
shab04515
]
Cadherins
Cadherin related
115617306 (CLSTN1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
Toxin_R_bind_N
Glyco_hydro_16
EphA2_TM
V_ATPase_I
PFF1_TM
SID-1_RNA_chan
Cadherin_C_2
Neur_chan_memb
Zip
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
115617306
NCBI-ProteinID:
XP_030363490
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All DBs
Position
16:4280981..4319624
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AA seq
972 aa
AA seq
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MPPRRPGMPRSLLPAPASCLLLAALLCGGAAAARVNKHKPWIETTYHGIVTENDNTVLLD
PPLIALDKDAPLRFAGEICGFKIHGQNVPFEAVVVDKSTGEGIIRSKEKLDCELQKDYTF
TIQAYDCGKGPDGANAKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNILKVE
AVDADCSPQFSQICSYEIVTPDVPFAIDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKR
AAEDVLVKISIKPTCKPGWQGWSKRIEYEPGTGALALFPSMHLEMCDEPVTSIQATVELE
TNHIGKGCDRDTYSEKSIHRLCGAASGTAELLPPPSSAANWTIGLPTDNGHDSDQVFEFN
GTQAVKIPDGVVTVNLKEPFMISVWMRHGPGTKEKETILCNSDKTDMNRHHYTLYVHNCR
LVFLFRQDPSEGKTYKPAEFHWKLNQVCDKEWHHYVVSVEFPVVTLYVDGVSYDPFPVTE
DYPLHPSKIETQLVVGACWQEYTGNENDNETVPETSAGGELRMAQFFRGNLAGLMIRSGK
LENKKVIDCLYTCKEGLDLQMADGVGKGVKIHMNPSQSTLTVEGDDIDRVDKAMQHISYL
NSRQFPTPGIRRLKITSVVKCFNEDACVSIPSVEGYVMVLQPEEPKISLSGINHFARSAS
EFESSEGVALFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDTCEVTVLGEE
LNQEQESLEIDMTRLQQKGIEMSSSNLGMIITGVDTMASYEEVLHLIHYRNWHTASLFDR
KFKLVCSELNGRYVSNEFKVEVNVIHTANPVEHANHIAAQPQFVHPVHHTFVDLSGHNLA
NPHPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSAL
TITVNPMETYEDQHSSEEEEEEEEEESEDGEEDDITSAESESSEEEEGEQEEDQQNVNRQ
QQLEWDDSTLSY
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcgccgcccgggcatgccgcgctcgctactgccggcccccgcctcctgcctg
ctgctcgccgcgctgctctgcggaggagcggcggccgctcgagttaacaagcataagcca
tggattgaaacaacctatcatggtatagttacggaaaacgacaacacagtgctcctggac
ccccctttgatagccctggacaaagatgcacctctgcgttttgcaggtgagatttgtgga
tttaaaattcacgggcagaatgttccctttgaagcagtggtagtggataaatccactggg
gagggaataatacgctctaaagaaaagcttgactgcgagctacagaaggactacacattc
accatacaggcctatgactgtggcaagggaccagatggagcaaatgcaaagaaatcccac
aaagcaacagtacatattcaggtgaacgacgttaatgagtatgctcctgtgttcaaagag
aagtcatacaaggcaacagttattgaagggaagaggtatgacaacatcctcaaagtggaa
gcggtggatgcagactgctcacctcagttcagccagatctgcagttatgaaattgtaact
ccagatgtaccttttgctattgacaaagatggttatataaaaaacacagaaaagttaaac
tatggtaaagaacatcagtataaactgacagtaacagcatatgactgtgggaagaagaga
gctgctgaggatgtgttggttaaaattagcattaagcctacatgcaagcctggctggcaa
ggctggagcaaaagaatagaatatgagcctggtactggtgcattagctctcttccctagt
atgcatttggagatgtgtgatgagccagtaacctcaattcaagcaacggttgaactagaa
actaaccatattggtaaaggctgtgacagagacacctactctgagaaatccattcacaga
ctctgtggtgctgcttctggcacagctgagcttctcccacctccaagcagtgctgctaac
tggacaataggacttcctacagataatggtcacgacagtgaccaagtctttgaattcaat
ggcacgcaagctgtgaagattccagatggtgttgtcacagtcaatctaaaagagcccttc
atgatttcagtatggatgaggcatgggcctggaaccaaagagaaagagacaattctgtgc
aattcagacaagacagatatgaaccggcaccactacacactctacgtgcacaactgccga
cttgttttcctcttccgccaagatccttcagagggaaaaacatacaaacctgctgaattt
cactggaaactgaaccaagtgtgtgacaaggagtggcatcattatgttgtcagtgtggaa
tttccagtggtaactctttatgtggatggggtttcctatgatcctttccctgtgactgaa
gactacccacttcatccttcaaagatagagacacagctggtagttggagcatgttggcaa
gaatatacaggaaatgaaaatgacaatgaaactgtgcctgagacctctgcaggtggtgaa
ctccgcatggctcagtttttccgaggcaatctggcaggtttgatgatccgttctggtaaa
ctggagaacaagaaggtgatagattgcctgtacacttgcaaggagggactggatttgcaa
atggctgatggtgttggcaaaggcgtgaagatccacatgaacccaagtcagtcaacactg
actgtggaaggggatgacattgacagagttgacaaggccatgcagcacatttcctatctg
aattcccgccagttcccaacgcctggaattcggaggcttaagatcaccagtgttgtcaaa
tgtttcaacgaagacgcctgtgtctccattccttctgtggagggatatgtaatggtcttg
caaccagaggaaccaaaaatcagccttagcggcatcaaccattttgcccgctctgcttca
gagtttgagagttctgagggtgttgccctctttcctgagcttcgcataataagcaccatt
acacgggaggtggagccagagggagatggagatgaagatcctacagtacaagagtcgttg
gtatctgaagagatcatgcataacctggatacgtgtgaggtgacagtgctaggagaggaa
ctgaatcaggaacaggaaagcctggagattgatatgacacgattgcagcagaagggcatc
gagatgagtagttccaacctgggcatgataatcacaggggttgatactatggctagttat
gaagaagttttgcacttgatacactacagaaactggcacactgcttccctcttcgacaga
aagttcaagttagtctgttctgagcttaatggtcgctatgtcagcaacgagtttaaagtg
gaggtgaacgtcatccacaccgctaacccagttgaacacgccaatcacatagctgcacaa
ccacagtttgtgcatccggtgcaccacacgtttgttgatctctctggtcacaacttggct
aatcctcacccgttttcagtcgttccaagtacagccactgttgtgattgtagtttgtgtc
agcttcctggttttcatgattattctgggagtgttccgaatccgagctgcacatcagaga
acgatgcgtgaccaggacactggaaaggaaaatgagatggactgggatgactctgctctg
accatcactgtgaaccccatggagacttacgaggatcaacacagcagtgaagaggaggag
gaggaagaggaggaagaaagtgaagatggagaagaagatgacatcactagtgcagagtct
gaaagcagcgaggaggaagagggagagcaggaggaggaccaacagaatgttaatagacag
caacagctggaatgggatgactctaccctcagttactga
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