Strigops habroptila (Kakapo): 115618084
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Entry
115618084 CDS
T08851
Symbol
NCAN
Name
(RefSeq) LOW QUALITY PROTEIN: neurocan core protein
KO
K06794
neurocan core protein
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
shab00535
]
115618084 (NCAN)
00536 Glycosaminoglycan binding proteins [BR:
shab00536
]
115618084 (NCAN)
04091 Lectins [BR:
shab04091
]
115618084 (NCAN)
Proteoglycans [BR:
shab00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
115618084 (NCAN)
Glycosaminoglycan binding proteins [BR:
shab00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
115618084 (NCAN)
Lectins [BR:
shab04091
]
C-Type lectins
Lecticans
115618084 (NCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
EGF
V-set
hEGF
EGF_TEN
Ig_3
Motif
Other DBs
NCBI-GeneID:
115618084
NCBI-ProteinID:
XP_030365108
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Position
20:complement(428104..440833)
Genome browser
AA seq
1344 aa
AA seq
DB search
MVHVMGDAGCWLLLGLSLLPIAVLGSQDDGKVIHINRVQHEAVRVGLGEPVALPCLFLLH
PSASLGPNEPPDPPRVKWSKVRSATGQREDVPILVAKDNTVKVVKAYEGRVSLPSYPRDR
YNATLVLRAARASDAGLYRCEVVAGIEDEQDLLPLEVTGVVFHYRPAGERYALTFPAARR
ACLDNSAVIASPQHLQAAFEDGYDNCDAGWLADQSVRYPITLSRPGCYGDRNSLPGVRSY
GHREPGEEYDVYCYARELRGTVFYAAAPGRFTWQGARRHCQRRGASLATTGQLYVAWREG
LDQCDPGWLADGSVRYPIRLPRRKCGGDASGVRTLYQFPNRTGFPPAASRFDAYCYKAHA
AEGQKEPEESALPAPNPLGSDNVLVEHGEDVGMSGDIRDTPHNRHSLLPQPGPAGLGEDE
DEQLQPASSSPMAQRGDLPSAAPTQAPGADGLGDGTSLPPTTASSPAWPHEDEALNVVDQ
APVSSQQDLASTSPALPVQEDPEEPLATLLPQSQSPAQEHVTGSPPALPGMGTEPGMAAE
TPSTPLASSRTPRQSSYPGLNGRYFQLQRQSRDPMAMAGDPTVAGDPMRTVTQAPVLALE
VKEAAANAVEMWSIPHASTESARWEGTYSPSNAVEEEISPKLMAPAAAPVSPSPQAPAHR
DSLWWSPRTPEEPARTLPPPSLSSAAPHGAPGHQDITAAGAQPRVPSARGDSPRPPANAT
EDFSGDAMSQEDGGSVPPQPPLPPALLVAESPEVALWHRSDGSNGSGAPGDGSLERQRKA
VTFLHPGGPSMGDPTTPGPTEVAAPQPQGGLSPTAPHRPPELPTQYRNAGKGSVMSTSGA
VVSPPVQDVPSEVTPWAGTEWPVLEPVAEDGSTGFAPGPTSHAAPGLGGAEHLLLPPPGP
RQHPTSPGPPGVPSREDAPTAPGEEDASGEVKREEPPAPLGSTTRSPWPSPTAPHPWEPE
APESPSAGPQFEPSMAAELEGAPLLDAGSGSGEEPALEERELLAWAGTGNTSQHAPSDPC
QNNPCLHGGTCRANGTVCGCSCAPGFTGENCEIDIDDCLSSPCQNGGTCIDEVNSFVCLC
LPSYGGSRCEKDTEGCDHNWHKFQGHCYRYFSRRRSWEDAERDCRRRAGHLTSIHSREEH
SFINGFGHENTWIGLNDRIVEQDFQWTDNTGLQYENWRENQPDNFFAGGEDCVVLVSHEI
GKWNDVPCNYNLPYICKKGTVLCGPPPEVENAFTVGKKKEKYSIHSSVRYQCEEGFTQRH
VPTIKCHSTGKWDRPKILCTKRGRTERGGTTTTGTATSTTSTTTTNPARSGENTASTSGW
TGWRRATTSRAAGQRSTKVPDGTW
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggtccatgtgatgggggatgccggctgctggctcctgcttgggctctccctcctcccc
atcgccgtcctgggctcgcaggacgatgggaaggtgatccacatcaacagggtgcagcac
gaggctgtgcgcgtggggctgggggagcccgtggccctgccctgcctcttcctgctccat
ccctccgcctcgctggggcccaacgagccccccgaccctccccgtgtcaaatggagcaag
gtgcgctcggccaccggccagagggaggatgtccccatcctggtggccaaggacaacacg
gtgaaggtggtgaaagcctacgagggccgtgtgtccctgcccagctacccccgtgaccgg
tacaacgccacgctggtgctgcgcgccgcccgggccagcgatgccgggctctaccgctgc
gaggtggtggctggcatcgaggacgagcaggacctgctgcccctggaggtgacgggcgtc
gtcttccactaccgcccggcgggcgagcgctatgccctgaccttccccgctgcccgccgc
gcctgcctggacaactctgccgtcatcgcctcgccgcagcacctccaggccgccttcgag
gatggctatgacaactgcgatgcgggctggctggccgaccagagcgtgcggtaccccatc
acgctgtcccggcccggctgctacggggaccgcaacagcctccccggtgtccgcagctac
ggccacagggagcctggtgaagagtacgatgtgtactgctacgcccgggagctgcgaggg
acagtgttctacgccgcggcgccggggcggttcacctggcagggggcccggcggcactgc
cagaggcggggcgcttcgctggccaccaccgggcagctctacgtggcgtggcgggagggc
ctggaccagtgtgacccgggctggctggcggacggcagcgtgcgctaccccatccgcctc
ccacgcaggaaatgcggcggtgacgcttcgggcgtcaggaccctctaccagttccccaac
cgcaccggcttcccccctgccgcctccagatttgatgcctactgctataaagcacatgca
gccgaagggcagaaggagccagaggagtcagcgctgcccgcgcccaacccactgggcagt
gacaacgtgttggtggagcacggcgaggacgttggcatgtcgggggacatccgggacacc
ccacacaaccgccacagcctcctgccacagccagggcccgcggggctgggtgaggatgag
gatgagcagttgcagccggcgagcagcagcccgatggcacagcgcggtgacctccccagc
gctgcaccgacacaggcaccgggggctgacgggctgggtgatggcacatccctgcctcct
accacagcctcctcaccagcgtggccccatgaggatgaagctctcaacgtggtggaccag
gcaccagtgagctcccagcaggatctggccagcaccagcccagcactgccggtgcaagaa
gaccctgaggagcccctggccacgctcctgccacagtcccaaagcccagcccaggagcat
gtcaccggctcaccaccagcactgcctgggatggggacagagcctggcatggcagcagag
acccccagcaccccactggccagctcccgcaccccgcggcagagcagctaccccgggctc
aatgggcgctacttccagctgcagcggcagagccgggaccccatggcgatggctggggac
cccacagtggctggggaccccatgaggacggtcactcaggcccctgtcctggccctggag
gtgaaggaggctgcagccaatgcagtggagatgtggagcatcccccatgccagcactgag
agcgcccggtgggaaggcacctactcaccctccaacgcggtggaggaggagatcagcccc
aagctgatggcaccagccgctgctcccgtgtcaccctcgccgcaggctcctgcccacagg
gattcactgtggtggagcccccgcacccccgaggaacccgcacggacgctgcctccgccg
tccctgtcctctgcagctccccacggcgcccctggtcaccaggacatcaccgcagccggg
gctcagccccgtgtccccagtgcccgcggggactccccccggccacccgccaatgccacc
gaggacttctctggtgatgccatgtctcaggaggatggtggctccgtcccgccgcagccc
ccgctgcccccggccctgctggtggctgagagccctgaggtggccctttggcaccgcagt
gacggcagtaacggcagcggggccccgggtgacggctcgctggagaggcagaggaaagca
gtgaccttcctccaccctggtggcccctccatgggggaccccaccacccctgggcccacc
gaggtggctgctccccagccccagggcgggctgagccccacggctccccacaggccaccc
gagctgccgacccagtaccggaatgctgggaagggctcagtcatgtccaccagtggagcg
gttgtgtcccccccagtgcaggatgtccccagcgaggtgaccccatgggctggcactgag
tggccggtgctggagccggtggctgaggacggatccacaggctttgcccccgggcccacc
agccatgctgcaccagggctggggggagcagagcatctactcctgccccccccaggccca
cggcagcaccccaccagccctggccccccgggtgtccccagccgtgaggatgcaccaaca
gcccctggcgaggaggatgcctctggggaggtgaagagggaagagccccccgcgcccctc
ggctcgaccacccgcagcccctggccatcacccactgccccccacccatgggaaccagag
gcccccgagtccccgagtgcggggccgcaatttgagccctccatggcagcagagctggag
ggggccccgctcctggatgctggcagcgggagcggtgaggagccggcgctggaggagcgg
gagctgctggcctgggcaggcaccggcaacaccagccagcacgctccatcagacccctgc
cagaacaacccgtgtctgcacggcgggacctgccgcgccaacggcaccgtctgcggctgc
agctgcgcccccggcttcaccggggagaactgcgagatcgacatcgacgactgcttgtcc
agcccctgccagaatggtggcacctgcatcgacgaagtcaactctttcgtctgcctctgc
ctgcccagctacggcggcagccgctgcgagaaagacacggagggctgtgaccacaactgg
cacaagttccagggtcactgctaccggtacttctcgcgccggcgttcctgggaggatgcg
gagcgggattgccgccgccgcgccggccacctcaccagcatccactcgcgggaggagcac
agcttcatcaacggctttgggcatgagaacacctggattgggctcaatgacaggatcgtg
gagcaggatttccagtggaccgacaacaccggcttgcaatatgagaactggcgggagaac
caacccgacaacttctttgcgggcggtgaggactgtgtggtgctggtgtcccacgagatt
ggcaagtggaacgacgtgccctgcaactacaacctgccctacatctgcaagaagggcaca
gtgctgtgtgggcccccgccagaggtggaaaatgccttcaccgtggggaagaagaaggag
aagtacagcatccactccagcgtgcgctaccagtgcgaggagggcttcacccagcgccac
gtgcccaccatcaagtgccacagcactggcaagtgggaccggcccaagatcctctgcaca
aaacgcggtcgcaccgagcgcggcggcaccaccaccaccggcacagccaccagcaccacc
agcaccaccaccacaaaccccgcaaggagcggcgaaaacaccgcaagcacctccggctgg
actggatggaggagggccactacttctagagccgcgggacaacgaagcacaaaggtccct
gatgggacgtggtga
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