Strigops habroptila (Kakapo): 115619389
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Entry
115619389 CDS
T08851
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shab04131
]
115619389 (VPS13A)
Membrane trafficking [BR:
shab04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115619389 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
DUF5764
Motif
Other DBs
NCBI-GeneID:
115619389
NCBI-ProteinID:
XP_030367384
LinkDB
All DBs
Position
Z:complement(62752093..62866143)
Genome browser
AA seq
3209 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVIAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQFLEARQRELQRIEE
AKQKIADQDKAKEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRNNPLSFGISLQ
NLSLQTSDQNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGSDESLVNLKHGVA
SHNVIPEGYDFVFRPISARAKLLMNPRSDVDFSSPKMDLNVNLQDITVEFNKPQYFSVME
LLESIDMMTRNLPYRKYRPDVPLHNNAKTWWKYVIYGILEVNVQPKLQMWSWEHIWHHRK
QVKSYKEMYKTKITSKKPNEEILKLLEEFEKALDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWNWSGEKKQEQKQEVKGSSLEELMTLEEKAKLYAAIGYSETAVDP
TLPKSYEAMKFSVKLLSMSISIRENKQSPELVEFALTGLSTVFTQRPGAQAIRFETRVTS
LEVTGMSREKCTPCLLSSRTVYSDESTSLLSIMFETNPLDEKADQRLRIESQPLEIVYDA
MTINSLVDFFRPPKDVHLEQLTSATMMKLEEFREKTSTGLLYIIETQKVLDLKINLMASY
IIVPQKGFYDQTSNLLLLDLGSLKMESKSRSDLSKLIVRQSTIEEIMSRAYDSFDIQLSS
IQLLYSKHDEKWQEARKLKYSSQHILQPLDVKLEFSRAMVVTDARMPKFKLSGQLPLLSI
QISDQNLTCILELIDSIPKPESAPATSTLPKITESMLSPVLSATHLSQSVFPGLDLHSFT
ESESEEEFYDALSSPVEDMPFFETPSGSLKQTSSTRQKTLCKQESLKAVTKFQLRFEVAE
VLIKLCRLTDNAETPVLELDIIKLGTELKLRRFDVTANAFLREVSLVCPEYVDDNDKPVY
IVTTLDNVDDDLLTLEYIKADINGPELKTIYQNVLQKIKVNFSSLDIQLHSQALLNAVNY
LNNILPKQETKVAEEPVYEKIEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRIFITEK
KHRIAEIHIEGLDSQVIMKKSATEVTAKLKNIIIVDSDETALYKKALYITGKEVFNFRMI
SYVNATDGIAYTNMNVVDNRIYLTVGCIQVVFVNKFISSILAFVNNFQAAKEALTEATVQ
AAEKAATGVKELAERSSRLALDINIKAPVVIVPQSAMSTNVLVADLGLITVKNQFFISKT
KTQYNLPPVVDCMTVKLSELKLYRSCYEQGSLQTEVQLLQPLNLEVVVERNLAAEWYNEV
PDIEISGLLKPMNIILSQEDITTILRTLNENIGGSSDASTPLPEPKDTTSQCSDLHSTSQ
HSAGVTVVTSAVVELHSSMKIKTTLKLDFRFDSLTLVLYSPDSKQQVTNLDQRDDLLKLA
EFKLGLMSAAVKMLSDGSMNASVKLANCTLDDKRQSIQMATPRMVEMKHGFDKKVMMDMS
YKQGRDGTVLDVIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPSKEQAPVQ
PISTMEMNIVVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYSMTAAVKELQMRA
CPFLPEERKGNITTVLQPCDFFFEMKQSSTNPQTVDLTMRSLTIKVSPIIINTVITITSA
LYQTAETTEEEVSPIPPDLWNKKDIKNLKMWFLEESNENEDKNPTAELVPTGESLKMNIE
SVFITLEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLRSRLELEVHYFNEMFGVWEPLLE
PLEVEKTDLFKPWVLEIKMKKKAKKALVESDAEEEHFKIPEYKTVINISSKDQLNITLSK
CGLQMLSHLGTAFAEAASQTSDIFKKDRAPFVIINSLGLPITVAPSDSFSVLNVEFGAKT
FILRDEENLNMEFVRTQNESDQFTAMTTLCSKRFYIQICPHNHSTVEKIPLTKVGRCIYR
VRHDESGVERAIVCQIDTVEGSKMITIRSPIQIRNHFSIPLNIFEEGRCIGTASPGNEFN
IPLSSYRSVLSLQPLANENGVDGEYDMCEGITFDEIMKNVESLLQRKCQSVRSTNHSLII
NIVPVKDMLTTSLCAEDQWDFPYVVHLWPSVLLRNLLPYQITYSLEGNGSKHDTLQEGCS
AQIHNAVLDQTKLDLQLLNYLDQNWKSEYHIKSNLPDISFTTFYCITELDKTELDIAVHV
TYTTGQMVIEIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQNNKVQ
LMVTDSELSDQFSLDTVGSHGSVKCKSHKKDYHVGVTIDNSSFNITRIVTFTPFFMISNR
SKYTLEVAEEGKEKWIPIVLQQWCEKQWERELSGMCIPFWPENDANKLLVRVENSNVLPK
KINFDKQENCLLLHLDNKLGGITVDVNLTEHSTVITFANYHDGAAPFLLINHTKEEIIEY
GQSSLSELEDCLQPNKAVLYTWADPAGSRKLKWKCGNRIEEITPKEDKMETLSLDCRKVV
YLVSFFEGLQRIVLITDNVNVFKLAYESVKAELAEQEIVLSLQDVGISLVNNYTKQEVSY
IGITSSDVVWETKPKKKSRWRPMSVKQTDKLEQEFKDYSELTPSENKIIELESNVLVCLT
PNGMNMKIQQPHEIPIRRNYLPALKVEYSSSAHQKSIRIQIYRIQIQNQIPGAIFPFVFY
PIKPPKSITLDSAPKPFTDVSIVMRTAGHSEISHIKYFKVLIQEMDLRLDLGFLYALVEF
FTQTDVLNDQELELFRKDVESLQEELMSVSSMDTSQISLYEYFHISPIKLHLSFSLSTGG
EDSNKEERKNELIPLQSLNLLLKSIGATLTDVQDVVFKLAFFELSYHFCTTQQLESAVVR
HYSKQAIKQMYVLILGLDVLGNPFGFIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGF
KALVGGAVGGLAGAASRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKG
LVSGFVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKK
VTDSSEDVISLRPPRFFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTD
LLMVTKSGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEF
GKIINFKTPEDAKWILSKLEEVRETQPKL
NT seq
9630 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgagtcgctggtcgtggacgtcctgaaccgtttcctcggcgactatgtggtg
aacctggacagctcccagttgaagctcggcatctggggaggagccgtagcactgaagaat
cttgaaataaaagaaaatgcactgagtcagctggatgtgccatttaaagttatagcagga
catattggtcaacttaacttacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttatttgcttattgtgcccacagccagtataaaatatgatgct
gaaaaagaagccaggcagttcttggaagcaagacaaagggaattgcaaagaatagaggaa
gcaaagcagaaaatagctgaccaagataaagcaaaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggttatcaaaaatcttcaggtgaaaatttccaacatccatatt
cgctatgaagatgatatcacaaatcggaataaccccttgtcatttgggatttcacttcag
aacctaagtttgcagacctcagaccagaattggaatccatgtttacatgatgaaactgcc
aagttgttctacaagcttgtacgactggataacctttttgcttactggaatgtgaaatca
gagatgttctaccatggtggtagtgatgaatcattggttaacttaaaacatggagttgcc
agccacaatgtgattccagaaggttatgattttgtattccgcccaatttcagctagagcc
aaactcctaatgaatcctcgatctgatgttgacttttcatcaccaaaaatggatttaaat
gtaaatttacaggatataactgttgaattcaacaagccacagtacttcagtgttatggag
cttcttgagtctattgatatgatgactcgaaatctgccatataggaagtacagacctgat
gttccattgcacaacaatgccaagacatggtggaagtatgttatttatggcatccttgaa
gtaaatgttcaacctaagctccaaatgtggtcgtgggaacatatttggcatcataggaaa
caagtgaagagctataaagagatgtataaaacaaagataacgtcaaaaaaacctaatgaa
gaaatcttaaaattgttggaggaatttgaaaaggccttggatatttttaacatcactcta
gcaaggcaacaagcagaagttgaggcaactaaggctggattaaaaatctacagaccagga
gtgaaacaagatgatgaaaattctggtggctggtttagttggatatggaactggtctggt
gaaaaaaagcaggaacaaaaacaagaagtaaagggttcaagtcttgaagagctgatgaca
cttgaagagaaggctaaactttatgcagcaattggatatagtgagacagctgtggatcca
acccttccaaaatcatatgaagccatgaagttctctgtgaagttattaagcatgtctata
tcaataagagaaaacaagcaaagtcctgagctggtagaatttgcattaactggcttgagt
acagtatttacgcaacgaccaggtgcacaagcaataagatttgaaacaagagttacctca
cttgaagttacaggcatgtcccgagaaaagtgtacaccctgcctcctatcttctcgaaca
gtgtattcagatgagagtacctcactcttaagcataatgtttgagactaatcctttggat
gagaaagcagatcagaggcttagaatagaatcacagccactggaaatagtatatgatgcg
atgacaataaatagcttagtggatttcttcaggcctccgaaagatgtccatttagagcag
ttgacatcagcaactatgatgaagcttgaagagtttcgtgaaaaaacatcaacaggtttg
ttgtatattattgaaacccagaaagttcttgacctcaaaattaacctcatggcttcatac
atcattgttccacaaaaaggattctatgaccagacatcaaatttactactcctggatctt
ggtagtcttaagatggaaagcaaaagtcgttctgatttatcaaaactcatagtacgacaa
agcactattgaagagataatgtcgagagcttatgacagttttgatatccagctcagcagt
atacagttactgtacagcaaacatgatgagaagtggcaagaggctcggaaactgaaatat
tcatctcaacatatcttgcagcccttggatgtaaaactggaatttagcagggctatggtc
gttacagatgcaagaatgcccaagttcaaattgtctggacagctgcctttactctctatc
caaatatcagaccagaacttgacatgcatcttggagctaattgatagcattcctaagcca
gaaagtgctcctgctaccagtacacttccaaaaataaccgagtctatgctatcgcctgtg
ctttcagcaacacatttatcgcaaagtgtgtttcctggtttggatcttcattcttttact
gagtcagaatcagaagaagaattttatgatgctctgagcagtcctgtggaagacatgccg
ttttttgaaactccgtctggttccctcaagcaaactagcagtacaaggcaaaaaacccta
tgtaaacaggaatctttgaaagctgtgacaaaattccagctaaggtttgaagtagctgag
gtcttaattaaactatgccgtcttactgataatgctgagacacctgtgctggagcttgat
attattaagttaggcactgaacttaaattaagaagatttgatgtgacggcaaatgctttc
cttcgtgaagtttctctggtgtgcccagagtatgtggatgataatgacaaaccagtttac
atagttactaccttggataatgtggatgatgaccttcttactctggagtacataaaggct
gatattaatggaccagaactgaaaactatttatcagaatgttctacagaaaataaaggtg
aacttttcatctctagatattcagttgcattctcaagctctgctgaatgctgtgaactat
ctgaataatattctacccaaacaagaaactaaagttgcagaagaaccggtctatgaaaaa
atagaggagaagaaggatgttcttaagaaattaacatcaaagaaatcgaagtatgaagat
gttattgacctcaatatctgtgcggatttatcttgtttacgtatctttattaccgagaaa
aaacatagaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaaaaaa
tcagcaacagaagtaactgcaaaattaaagaacatcattattgtggattctgatgagaca
gcattgtataaaaaggctctttacatcacaggaaaagaagtcttcaactttagaatgata
tcgtatgtgaatgctacagatggcattgcatatacaaatatgaatgttgttgacaatcgt
atttacctgactgttgggtgtattcaagtagtttttgtcaacaaattcatttcatctatt
ttggcttttgtaaataactttcaagcggccaaggaagctcttactgaggcaactgttcaa
gcagcagagaaagcagctacaggtgtaaaagaactagcagagcgtagttcccgtttggca
ctagatatcaatattaaagcacctgttgtgatagttccacagtcagcaatgtctacaaat
gtcctggtggctgatcttggtctaatcactgtgaagaaccagttctttatctctaaaaca
aaaacacagtataatctcccacctgttgttgactgtatgacagtgaaattgagtgaactg
aagttatacagatcatgctatgagcaaggttcattacaaactgaagtacagttgctgcag
ccactcaatctggaagtagttgttgaacgaaatttagctgctgaatggtataacgaagtt
cctgatattgaaatatctggcctactcaagcctatgaatataattctcagtcaggaagat
attaccacaatattgaggacactaaatgaaaatataggtggaagctctgatgcatcaaca
cctttaccagagccaaaagatactactagccaatgtagtgatttgcatagtacttcacag
cattctgcaggtgtaactgttgtgacatccgctgtggtggaattgcattcatctatgaaa
ataaaaacaacactaaaactggacttcagattcgactctctgactttagtattgtatagt
ccagattcaaaacagcaggttacaaatttggatcagagagatgaccttttgaagcttgca
gagtttaaattaggtttgatgtcagctgctgtcaaaatgttatcagatggttcaatgaat
gcttcagtcaagctggcaaactgcacattagatgataaaagacagtcaatccagatggct
acaccaagaatggtggaaatgaaacatggattcgacaagaaagttatgatggatatgagc
tataagcaggggagagatggcactgttcttgatgtgattgttcaagagatatacctttgt
gcaagcatggagtttctacttactgttgcagatatattcttaaaggctaatgcagaaagt
gctgctgcacagagaaatctcaaacagtcattaccttcaaaggagcaagcacctgtgcag
cctatatctacaatggaaatgaacattgttgttaaaaatccggagattgtgtttgtggcc
gacttaacaagaagcgatgctcctgcactggtggttacaacacaatgtgaggtcttcatt
aaaaatagtcctgaaaggtatagcatgacagctgctgttaaagagttacaaatgagagca
tgcccatttcttccagaagaaaggaaagggaacattactacggtattacagccttgtgac
ttcttttttgaaatgaaacagtcaagtactaatccacagacagttgatctaacgatgaga
tctctaacaataaaagtttcaccaataatcataaacacagtaattactattacatcagcc
ctttatcaaactgcagaaacaacagaagaagaggtcagtccaattcctccagacctgtgg
aataagaaagatataaaaaatctaaaaatgtggtttcttgaagagtcaaatgaaaatgaa
gataaaaatccaactgctgaactggttcctacaggagagtcattgaaaatgaatatagaa
tctgtttttataacacttgaagctggtgttgggcaccgaactgtaccgatgcttttagct
aagtcctcatttctcggggaagtcaagaactggagtactttaatcaacctacgttctcgt
ctggaactagaggtacactattttaatgagatgtttggggtgtgggaacctttgcttgaa
ccactagaagttgagaagactgatttattcaaaccatgggttcttgaaatcaagatgaag
aagaaggctaaaaaagcattggttgaatcagatgcagaagaagaacacttcaaaattcca
gaatataaaacagtaataaatatttcttcaaaagaccagctgaacattacattatccaaa
tgtggactacaaatgttaagtcacttgggcacggcatttgctgaagcagctagtcaaact
tcagacatcttcaaaaaagaccgagcaccatttgtaataataaattctttaggacttccc
atcactgttgcacctagtgattcctttagtgtccttaatgttgaatttggagcaaaaaca
tttattctaagagatgaagagaatttaaatatggaatttgtcagaactcaaaatgagagt
gaccagttcacagcaatgacaactctttgcagcaagaggttttacattcagatctgtcca
cataatcattccactgtggaaaagattccattgacaaaagtgggtcgatgtatttacaga
gtgagacatgacgaatcaggtgttgaaagggccattgtctgtcaaattgatactgttgaa
ggaagcaagatgataactatacgttctcctattcagataaggaatcatttttcaatcccg
ttaaatatttttgaggaaggaagatgtatagggactgcttcaccaggaaatgaattcaac
ataccattgtcctcttacagatccgtactgagtttgcaaccgctagcgaatgaaaatgga
gtggatggagagtatgatatgtgtgaaggaattacgtttgatgaaattatgaaaaatgtt
gagagtttattacaaaggaagtgccagtctgtgaggtcaactaaccactcacttatcatc
aatattgttcctgtaaaagacatgttgacaacttcattatgcgcagaagatcaatgggat
tttccatatgttgttcatttatggccttctgttcttctccgcaatcttcttccttatcaa
ataacttattctctagagggaaatggaagcaagcatgacactctacaagagggatgttca
gcccagatacataatgcagtcttggatcaaacaaaactagatttgcagttacttaactat
cttgatcaaaattggaaaagtgagtaccatataaaaagcaatctacccgatatcagcttt
acgacattttactgcatcacggagttggataaaactgaactggatattgctgtccacgtg
acctacacaactgggcagatggttatagagattcacagtccatactggatggtgaataaa
actggtcgaatgttgcagtacaaagctgatggtattcaccgcaagcatcctccagattac
aaaaagccgctccttttctctttccagcccaaaaacttcttccaaaataacaaggtgcag
cttatggtaactgacagtgaactgtctgatcagttttcactggacaccgttggaagccat
ggttctgtgaaatgcaagagtcataaaaaagattatcatgtcggtgtcaccatagacaac
agcagttttaatattactagaattgtaactttcactccattttttatgatctcaaataga
agcaaatacactttggaagtagctgaagaaggaaaggaaaagtggattcctattgtttta
caacagtggtgtgagaaacaatgggaaagggaacttagtggcatgtgcattcctttttgg
cctgaaaatgatgccaacaaactacttgttagagttgaaaattctaatgtcctcccaaag
aaaataaattttgataagcaggaaaactgtctgctactgcatttggacaacaagcttgga
ggaattacagtggatgttaacctgactgaacattctacagtgattacctttgctaattac
catgatggcgcagctccatttctattaataaaccatactaaagaggaaatcattgagtat
ggacaaagttcccttagtgaattggaagactgtcttcagccaaacaaggcagtactgtat
acttgggcagacccagcaggatctagaaaattgaaatggaaatgtggaaatagaattgag
gaaattaccccgaaagaagacaaaatggaaacactcagcctggactgtagaaaagtggtc
tatttagtgtcattttttgaaggtttgcagcgcattgtcctgatcactgataatgtgaat
gtatttaaattggcgtatgaaagtgtaaaagcagaactagcagagcaagaaattgttctg
tctttgcaagatgttggaatttcattggtaaataattatacaaagcaggaggtgtcctac
attggaattacaagttctgatgtggtttgggaaacaaaacccaagaagaagtcaagatgg
agaccaatgagtgttaagcagactgataaactagaacaagaattcaaagattacagtgag
ctaactccttcagaaaataagattattgagctggaatcaaatgttttggtgtgtttaact
cctaatggaatgaatatgaaaattcaacaaccacatgagattcctattagaaggaattat
ctgccagctttaaaagtagaatacagctcatctgcacatcagaaatccatcagaattcaa
atttacaggatacagatacaaaaccagattcctggagccatatttccctttgtgttctat
cctattaaacctccaaagtccatcaccttggattcagcaccaaaaccatttactgatgtc
agtattgttatgagaactgcaggacattcagaaatatctcatattaagtattttaaggtc
ctgattcaagagatggatctcagattagatcttggcttcctatatgcgctggttgaattc
tttacacaaactgatgtgctgaatgaccaagagctagaacttttcagaaaggatgttgaa
tctcttcaagaagaactgatgagtgtatcatccatggatacgtcacaaatcagcttgtat
gaatactttcatatctctccaattaagttacacttaagcttttcactcagtacgggtgga
gaagacagtaacaaagaagaaagaaagaacgaattgataccacttcagtccttgaacctc
ctgctgaagagtataggggccaccctcacagatgtgcaagatgttgtctttaagttggca
ttctttgaactcagctatcacttctgtactacacaacagctcgaatcagcagttgtaagg
cattattcaaaacaggctattaaacagatgtatgttcttattcttggcctcgatgtcttg
ggtaatccatttggattcataagaggcttgtctgaaggagtagaagcattcttctatgaa
ccttaccagggagccatccagggtcctgaagaatttgtagaaggaatggcactaggattc
aaagcactagtagggggagctgttggtggattagctggtgctgcgtcaagaatcactggt
gctatggcaaaaggagtagctgcgataactatggatgaggattaccagcagaaaaggaga
gaagccatgaataaacagcccactggtctgagagagggtatcactcgtggaggaaaagga
ttagtttctggttttgtcagtggcataacaggaatagttacaaaaccaataagaggagct
cagaaagaaggagcagctggttttttcaaaggtgttggaaaaggcttagtgggagcagta
gctaggcctactggaggaatcatagacatggcaagcagcacatttcagggtattaagaaa
gttacagattcatcagaagatgtgataagcctgcgcccgcctcgcttctttggtgaagat
ggagttattagaccttacagattaagagatggaaccggaagccaaatgttacagaaaatt
gaaaatggaagatttgcaaaactgagatacattgcacatgctatggtcaacagtacagat
ctgttaatggttacaaaaagtggtgtgttatttgtgacaaaagggacatttggacagctg
acatgtgaatggcaatacacttatgatgaatttaccaaagaaccattcatcgtcgatggc
agaagattacgcattgaagccaaggagcgagttaagtctgtgttccatgccaaagaattt
ggaaaaattattaattttaaaactccagaggatgctaagtggatcctttctaaactggaa
gaagtgagagagactcagccaaaattgtaa
DBGET
integrated database retrieval system
