Strigops habroptila (Kakapo): 115619472
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Entry
115619472 CDS
T08851
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shab03021
]
115619472 (CHD1)
03036 Chromosome and associated proteins [BR:
shab03036
]
115619472 (CHD1)
Transcription machinery [BR:
shab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115619472 (CHD1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
115619472 (CHD1)
SLIK complex
115619472 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
Motif
Other DBs
NCBI-GeneID:
115619472
NCBI-ProteinID:
XP_030367624
LinkDB
All DBs
Position
Z:22670618..22724083
Genome browser
AA seq
1810 aa
AA seq
DB search
MNGHSDEESIRNSTGESSRSDDDSGSASGSGSGSSSSSSDGSSSQSGSSDSDSGSESGTE
SESESDTSREKKQIQAKPPKVDGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGSEE
DSSSSEDSADDSSSETTKRKHKDEDWQMSGSGSVSGTGSDSESEGDREKSSCEESESDYE
PKNKVKSRKPPSRIKPKSGKKSAGPKKRQLNSSEDEEEEEDDDDDYDKRGSRRQATVNIS
YKEAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMESRVGRKGATGAATTIYAVEADG
DPNAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSEC
SWEDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLEL
RDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLST
LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS
FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSAL
QKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE
LRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKV
ANFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQIS
FNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAVARDAELVDKSEIDLRRLGELVHNGCIKALKDNSSVQERAGGRLGKVKGPT
FRISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNL
LIGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKE
AQRLAGAGNSKRRKTRTKKNKVMKAAKIKEEIKSDSSPQPSEKSDEDDDEDNKDEIVSMK
HPHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIK
EKRENKVKESTQKEKEVKEEKVNEVKPENKEKTKKTPLLDTPVHITATSEPVPISEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNP
EQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPD
VERLKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHR
DWDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLEGSLKESRAHLDHRSHSDHRIYSDHRST
SEYSHHKSPRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKST
PEHTWSSRKT
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagcataagaaacagtactggagagtcaagccgatca
gatgacgattctgggtcagcatcaggttctggatctggttcaagctcaagcagtagtgac
ggaagcagcagccagtcaggtagcagtgactccgactctggttcagagtcaggcactgag
tcagaatcagagtctgacacatctagagagaagaaacaaattcaagctaaaccaccaaaa
gttgacggatctgagttttggaagtctagtccaagtatacttgcggtgcaaagatcagca
gtacttaagaagcaacagcaacaacaaaaggcagcctcatcagacagtggttcagaagag
gactcgtcaagtagtgaggattctgcagatgactcatccagtgaaaccacgaagagaaaa
cataaagatgaagactggcagatgtcgggatcagggtcagtatcaggaactggttccgat
tctgaatcagagggagatagggagaaaagcagttgtgaagagagtgaatctgactatgag
ccaaaaaacaaggtcaaaagccggaagcctccaagcagaattaagccaaaaagtgggaag
aagagtgcaggaccaaaaaagagacaacttaattcatcggaggatgaggaggaggaagag
gatgatgatgatgattatgataagagaggatctcgtcgccaggcaacagtcaacataagt
tacaaagaagctgaagaaaccaagacagattctgatgatttactggaagtttgtggagaa
gatgtcccacaaactgaagaagatgaatttgaaactatagaaaaattcatggagagtcga
gttggacgaaaaggagccacaggtgctgcaaccaccatttatgcagttgaggcagatggt
gacccaaatgctgggtttgaaaagtcgaaagagccaggagaaatacagtatcttattaaa
tggaaaggttggtcacacatccataacacttgggaaactgaggaaacactgaagcaacaa
aatgttaaaggaatgaagaaactggacaactacaaaaaaaaggatcaggaaacaaaacga
tggctgaaaaatgcttctccggaagatgtggaatattacaactgccagcaggagcttaca
gatgatctacataaacaatatcagatagtggaaagaataattgctcattcaaatcagaaa
tcagcggctggttatccagactactattgtaaatggcagggtctgccctattcagaatgt
agctgggaagatggtgctctcattgccaaaaagtttcaggcacgcattgatgaatacttt
agcagaaatcagtccaagactactccctttaaggattgcaaggttctaaaacagaggcca
aggtttgttgcactgaagaagcaaccatcatacattgggggacatgaaagtttggagtta
agagattatcagttaaatggattgaattggcttgctcactcatggtgcaaggggaatagc
tgtattcttgcggatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaac
tacctgtttcatgaacatcaattgtatgggcctttcctgctggtcgtgccactttctacc
ttgacatcttggcaaagagagattcaaacttgggctcctcagatgaatgctgtagtttac
ttaggagatataactagcagaaatatgataagaactcatgaatggatgcatccacagacc
aaacgattaaaatttaacatacttctaacaacgtatgaaatcttgcttaaggataagtca
ttccttggtggtctgaattgggcattcataggagttgacgaagcgcatcgtttaaaaaat
gacgactctcttctgtacaagactttaatagactttaagtctaaccatcgtcttcttatt
actggaacccctttgcaaaactccctgaaagagctttggtctttgttgcacttcatcatg
ccagaaaagttttcctcctgggaagattttgaagaggagcatggcaaagggagagagtat
ggttatgcaagtcttcataaagaacttgaaccatttttgctgagaagagttaaaaaagat
gtagaaaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattg
cagaagcagtattacaagtggattttaaccaggaattataaagctctcagtaaaggttca
aaaggcagtacctcaggctttttgaacatcatgatggaactcaagaagtgttgtaaccat
tgctacctcattaaaccaccagatgataatgaattctataataaacaggaggctttacag
catttaatacgtagcagcgggaaactaatccttcttgacaagctactgattcgtctgcga
gaacgtggcaacagagttctgattttctcacagatggtgaggatgctggacatcctagca
gaatatctgaagtatcgtcagtttccctttcaaagacttgacggatcaataaaaggggaa
ttgaggaaacaagcactggatcattttaatgcagatggttcagaggatttctgctttttg
ctgtctaccagagctggaggattaggtatcaacttggcatctgctgacactgtagttata
tttgattctgactggaatccacagaacgatctgcaggcacaggctagagcacataggatt
ggacaaaagaaacaggttaatatttatcggctagtcacaaaaggatcagtagaagaagat
attcttgaaagagccaagaaaaagatggtgttagatcatctagtaattcagagaatggac
actacagggaaaactgtgctacatacaggctctactccttcaagctcaacaccttttaat
aaagaggaattatccgcaattttgaagtttggtgctgaggaactttttaaagaacctgaa
ggggaagaacaggagccccaggaaatggatattgatgaaattttgaagagggctgaaact
cgggaaaatgagccaggtccattaactgtgggagatgaattgctttcacagttcaaggtg
gccaacttttccaacatggatgaagatgatattgagttggaaccagaaagaaattcaaga
aattgggaagaaatcattccagaagtccagcggcgaagaatagaagaggaagaaagacaa
aaagaacttgaagaaatatacatgctcccaaggatgagaaactgcgcaaaacagatcagc
tttaatggaagtgaagggaggcggagtaggagtagaagatactctggatctgatagtgac
tccatctcagaaaggaaacggccaaaaaagcgtggaagaccacgaactattcctcgagaa
aatattaaaggatttagtgatgcagagatcaggcggtttatcaagagttacaagaaattt
ggtggccccctcgaaaggttagatgctgtagccagagatgctgagctagttgataaatca
gagatagatcttcgacgtttgggagagcttgtacataatggatgcattaaagctttaaag
gacaattcatctgtacaagaaagagcaggaggtagacttgggaaagttaaaggcccaaca
ttccgaatctcaggagtgcaggtgaatgcaaagctagttatctctcatgaagaagagttg
gcaccattgcacaaatccattccttcagatccagaagaaagaaaaagatatgtcatccca
tgccacaccaaggctgctcattttgatatcgattggggtaaggaagatgattccaatctg
ttgataggcatctatgagtatggttatggcagctgggaaatgataaaaatggatcctgat
ctcagtttgacacagaagattttgcctgatgatccagataagaaaccccaggcgaagcag
ttacagacccgagcagactacctcattaagttacttaataaagaccttgcaagaaaggaa
gcacaaaggcttgctggtgcaggcaattcaaagagaaggaaaacaagaactaagaagaat
aaagtgatgaaggctgcaaaaataaaagaagaaataaaaagcgattcgtcaccacaaccc
tcagaaaaatctgatgaagatgatgatgaggataacaaggatgagattgtttcaatgaaa
catccacataaaaaaattaaagcagaaaaagaaaatgaagaaaagcctgagccagatatt
ggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggat
ttgaaaagggagaaaaaagaaaaagaggataaaaaagagttaaaagaaaaagatattaaa
gaaaagagagaaaacaaagtaaaagaatctacgcagaaagaaaaagaagtaaaggaagag
aaggtaaatgaagtaaagcctgaaaataaagaaaaaactaaaaaaactccattgttggat
actccagttcatattactgcaactagtgaaccagttcctatatcagaagaatctgaagaa
ctagatcagaaaacatttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcattg
aaacagctggatagaccagagaagggcctttctgaaagagagcagctggaacatactaga
cagtgtctaatcaaaattggggatcacattactgaatgtctaaaggagtacacaaatcct
gaacaaattaaacagtggagaaaaaatttgtggatttttgtctctaagtttacagaattt
gatgccagaaagctgcacaaactgtataaacatgcaatcaaaaaacgtcaagagtctcag
caacacaatgaccagaatattagcagcaatgtgaatacacatgtaattagaaatccagat
gtggaaagactgaaggagaatacaaaccatgatgacagtagcagggacagttactcttct
gatagacatttgtcacaataccacgatcatcataaagataggcatcagggagatgcttac
aagaaaagtgactctaggaaaaggccctattcagccttcagcaatggaaaagatcacaga
gactgggatcactacaaacaagacagcagatactacagtgacagtaaacatagaaagtta
gatgactacagaagcagagaccacaggtcaaacctggaaggaagtttaaaagaaagccgg
gctcatttggatcaccgttcccattcagaccacaggatatattcagatcaccgttcaact
tcagagtacagccatcataagtctcctagagattatagataccactcagactggcaaatg
gaccacagagcatctggtagtggcccaaggtcaccattagatcagaggtctccttatggt
tcaagatctcccctaggacacagatctccatttgaacactcatcagatcataaaagtaca
cctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
