Spiribacter halobius: LMH63_04120
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Entry
LMH63_04120 CDS
T09389
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
shai
Spiribacter halobius
Pathway
shai02020
Two-component system
shai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMH63_04120
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMH63_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shai03021
]
LMH63_04120
Transcription machinery [BR:
shai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMH63_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UEX78839
LinkDB
All DBs
Position
complement(902445..903917)
Genome browser
AA seq
490 aa
AA seq
DB search
MKQSLQLRLGQQLTMTPQLQQAIRLLQLPTLELRMEIQQALESNLMLEAAEEAELEAAAE
RDEDGAEASEAAPDRTEQDLGGEEPDAARLTEDLPVDSSWEDVYDGSTTYSHSGSDDERD
LFENQSGGEESLRDYLIWQLQMAPISPRDMAIAEAIVDAVRDDGYLGEPLEEIGAGLPPE
LEVEPDDLQAVLARVQRLDPVGVAARDVREALLVQLDQLDPATPHLAAARELVDQHLELL
VSRQFAQLKRRMRLDLETLQAALALVQTLDPRPGARFSTERTEYVVPDVFVRRVNGDWQV
EVNPDACPRLRVNSYYASLVRRADNSRDNSLMRQHLQEARWLIKSLRSRNDTLLKVAECI
VERQRGFLEQGEEAMQPLVLREVAETIEMHESTVSRITNQKYMHTPRGTFEFKYFFSSHV
QTVDGGECSATAIRARIRRLVADEDPASPLSDSRLAEILREEGINVARRTVAKYREAMAI
ASSTERKRLA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtcgctacagctccgactcgggcaacagctcaccatgaccccgcagctgcag
caggccatccggctgctgcagctgccgaccctcgaactgcgcatggagatccagcaggcg
ctggagtccaacctgatgctcgaggccgcggaggaagcggagctcgaggcggccgcggag
cgcgacgaggacggggccgaggcgtcggaggccgcaccggaccgcacggaacaggatctc
ggcggcgaggagccggatgccgcgcgcctcaccgaggacctcccggtggactccagctgg
gaggacgtctacgacggcagcaccacctacagccactccggttccgacgacgagcgcgac
ctcttcgagaaccagtccggcggcgaggaatccctgcgcgactacctcatctggcagctg
cagatggctccgatctcgccccgggacatggccatcgccgaggccatcgtcgacgccgtg
cgcgacgacggctacctcggcgagccgctggaggagatcggcgccggcctgccgccggag
ctggaggtggagccggacgacctgcaggcggtgctggcccgggtgcagcggctggacccg
gtgggtgtggcggcccgggacgtgcgcgaggcgctgctggtgcagctggaccagctggac
ccggccacgccccatctggcggcggcccgcgagctcgtggaccagcacctggagctgctg
gtcagccgccagttcgcccagctcaagcgccgcatgcggctcgacctcgagaccctgcag
gcggccctggcgctggtgcagaccctggacccccgccccggcgcgcgcttcagcaccgag
cgcaccgagtacgtggtgccggacgtgttcgtgcgccgcgtcaacggcgactggcaggtg
gaggtgaacccggacgcctgcccgcggctgcgggtgaacagctactacgccagcctggtg
cgccgggccgacaacagccgcgacaacagcctcatgcgccagcacctgcaggaggcgcga
tggctgatcaagagcctgcgatcgcgcaacgacaccctgctcaaggtggcggagtgcatc
gtcgagcgccagcggggcttcctcgagcagggcgaggaggcgatgcagccgctggtgctg
cgcgaggtggccgaaaccatcgagatgcacgagtccacggtctcgcgcatcaccaaccag
aagtacatgcacaccccgcgcgggaccttcgagttcaagtacttcttctccagtcacgtg
cagaccgtggacggcggcgaatgctccgccacggcgattcgcgcgcgcatccggcgcctg
gtcgccgacgaggatccggcgagcccgctgagcgactcgcggctcgccgagatcctgcgc
gaagagggcatcaacgtggcacgcaggacggtggccaagtaccgagaggccatggccatc
gcctcgtccaccgaacgcaagcggctggcctga
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