Sediminicurvatus halobius: LMH63_07900
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Entry
LMH63_07900 CDS
T09389
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shai
Sediminicurvatus halobius
Pathway
shai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMH63_07900 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shai03019
]
LMH63_07900 (pnp)
03016 Transfer RNA biogenesis [BR:
shai03016
]
LMH63_07900 (pnp)
Enzymes [BR:
shai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LMH63_07900 (pnp)
Messenger RNA biogenesis [BR:
shai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LMH63_07900 (pnp)
Transfer RNA biogenesis [BR:
shai03016
]
Prokaryotic type
tRNA degradation factors
LMH63_07900 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
RNase_II_C_S1
KH_SLS1_2
DUF3228
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
UEX79557
LinkDB
All DBs
Position
1743399..1745510
Genome browser
AA seq
703 aa
AA seq
DB search
MTPTAVKKSFQFGEQTVTLETGRIARQASGAVLVNMSDTVVLVTVVGKKEQVEGRSFLPL
TVNYQERTYAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFPEGFSNEVQVIATVIS
MNPEVDADIPALIGTSAALAVSGIPFEGPIGAARVGYSDGQFLLNPTFTQLESSELDLVV
AGTEQAVLMVESEAHRLPEQTMLDAVLYGHEQMQSAIAAINELAAEAGKPRWDWQPPAKD
ESLAERVRSVAEQSLTEAYAITEKQARQEAIGAVRERVVEELVATDEKPDGYSPDQVSAA
FKDLEKRIVRGRIIRGEPRIDGRDTRTVRAIDIEVGSLPRTHGSAIFTRGETQAVVVTTL
GTGRDAQIIDAIEGERREPFMLHYNFPPYCVGETGFMGTPKRREIGHGKLAKRGIQAVMP
TPEDCPYVIRVVSEITESNGSSSMATVCGTSLSLMDAGVPIAAPVAGIAMGLIKEGDDFA
VLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKINGITREIMERALEQAREGRLHILGK
MNEVIGEARAEMSAYAPRLITMKIDPEKIRDVIGKGGATIRQLTEETGTTIDITDDGTVT
IGSVDKAAGEEARRRIELLTADVEVGQIYEGKVIKLMDFGAFVNILPGRDGLVHISQISN
RRVESVSDELTEGQTVRVKVLEVDRQGRIRLSIKAINEEGASA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactccgaccgccgtcaagaagtctttccagttcggcgagcagaccgtgaccctggag
accgggcgtatcgcccgccaggccagcggcgccgtactggtgaacatgtccgataccgtg
gtgctggtcacggtggtagggaagaaggagcaggtagagggccgcagcttcctgcccctg
accgtcaactatcaggagcgcacctacgccgcgggcaagattcccggtggcttcttcaag
cgtgagggtcgcccctcggagaaggagaccctggtctcccggcttatcgaccggcccatc
cggccgcttttcccggagggcttctccaacgaggtgcaggtgatcgccacggtgatctcc
atgaaccccgaggtcgacgccgacatccccgcgctcatcggtacctcggcggccctggcc
gtctccggtattcccttcgagggcccgattggcgcggcgcgggtgggctacagcgacggc
cagttcctgctcaacccgaccttcacccagctggagagctccgagctggatctggtggtc
gccggtaccgagcaggcggtgctgatggtggagtccgaggcacaccgcctgcccgagcag
accatgctcgacgcggtgctctacggccacgagcagatgcagtcggcgatcgccgccatc
aacgagctcgccgcggaggccggcaagccgcgctgggactggcagccgccggcgaaggac
gagagcctcgccgagcgcgtgcgcagcgtcgccgagcagtccctgaccgaggcgtacgcc
atcaccgagaagcaggcccgccaggaggccatcggcgccgttcgtgagcgggtggtggaa
gagctcgtcgccaccgacgagaagcccgacgggtattctcccgatcaggtctccgccgcg
ttcaaggatctcgagaagcgcatcgtccgtggccgcatcatccgcggcgagccccggatc
gacggtcgtgacacccgcaccgtgcgcgccatcgacatcgaggtgggctccctgccacgc
acccacggctcggccatcttcacccgcggcgagacccaggccgtggtggtgactaccctt
ggcaccggccgcgacgcgcagatcatcgatgccatcgagggcgagcggcgcgagccgttc
atgctgcactacaacttcccgccgtactgcgtcggtgagaccggcttcatgggcacgccc
aagcgccgcgagatcggccacggcaagctcgccaagcgcggcatccaggccgtgatgccg
acgccggaggactgcccctacgtcatccgcgtggtctccgagattaccgagtccaacggc
tccagctccatggccacggtctgcggcaccagcctctcgctgatggacgccggcgtgccc
atcgccgcgccggtggcgggtatcgccatgggcctgatcaaggaaggcgacgacttcgcc
gtgctcaccgacatcctcggcgacgaggaccacctcggcgacatggacttcaaggtggct
ggcaccgagcagggcgtcaccgccctgcagatggacatcaagatcaacggcatcacccgc
gagatcatggagcgggcgctggagcaggcccgggaagggcggctgcacatcctcggcaag
atgaacgaggtgatcggcgaggcccgcgcggagatgtccgcctacgcgccgcggctgatc
accatgaagatcgacccggagaagatccgcgacgtcatcggcaagggcggcgccaccatc
cgccagctcaccgaggagaccggcaccaccatcgacatcaccgacgatggcacggtgacc
atcggctccgtggacaaggccgccggcgaggaggcgcgccggcgcatcgagctgctcacc
gccgacgtcgaggtgggccagatctacgagggcaaggtcatcaagctgatggacttcggc
gccttcgtgaacatcctccccggccgcgacgggctcgtgcacatctcccagatctccaac
cgtcgcgtggagagcgtctccgacgagctgaccgaaggccagaccgtgcgggtcaaggtg
ctggaggtggaccgccagggccgcatccgcctcagcatcaaggcgatcaacgaggagggc
gccagcgcctga
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