Sediminicurvatus halobius: LMH63_09090
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Entry
LMH63_09090 CDS
T09389
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
shai
Sediminicurvatus halobius
Pathway
shai02020
Two-component system
shai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMH63_09090
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMH63_09090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shai03000
]
LMH63_09090
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shai02035
]
LMH63_09090
Transcription factors [BR:
shai03000
]
Prokaryotic type
Helix-turn-helix
Other families
LMH63_09090
Bacterial motility proteins [BR:
shai02035
]
Flagellar system
Flagellar assembly proteins
Others
LMH63_09090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
FleQ
HTH_8
AAA_5
AAA_16
HTH_50
bpMoxR
AAA_30
AAA
AAA_7
AAA_2
Motif
Other DBs
NCBI-ProteinID:
UEX79782
LinkDB
All DBs
Position
1994493..1995917
Genome browser
AA seq
474 aa
AA seq
DB search
MVRVLVVDDDRRRRDGIDAVLRFLGHEPLLPDDDGTLAQLVRQREPAVALVTDDGAGTAH
GPLGELWEAAPHMPVFLLREGDARAPRGAALGANVLGVLSLPLRQQAFDAALRQALGHNR
QAEPKAAPSEAPRLVGESPAMQRLRRLITQVAGSEASVLILGESGTGKEVVARQIHELSE
RRNGPFVPVNCGAIPGELLESELFGHEKGAFTGAISSRQGRFELAQGGTLFLDEIGDMSL
PMQVKLLRVLQERTFERVGSNRTQHADVRILAATHRDLEARIVEGEFREDLFYRLNVFPL
ELPPLRRRASDIPVLIEELVRRIEDEGRGSVRISPRALSVMSQYPWPGNVRELANVVERL
AILAPYGEAALDDLPEKLLAAAEELPEDAGIAAEDEAHEPPTNGHAHPGGLGQIRVAPDG
IDLRGIMGDLEQRLIREALDASEGVVAQAAKLLNLRRTTLVEKLRKYDIQRDTA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggttcgggttcttgtcgtcgacgacgaccgccggcgccgcgacggcattgacgcggtg
ctgcgctttctcggccacgagccgctgctccccgatgacgacggcacgctggcccagctt
gtacgccagcgcgagccggccgttgccctggtaacggatgacggtgccggtactgcccat
ggccccctcggcgagctgtgggaagcggcgccgcacatgcccgtcttcctgctgcgcgag
ggtgatgcgcgcgcgccgcgcggggccgccctcggtgcgaacgtgctcggcgtgctcagt
cttcccctgcgccagcaggccttcgacgccgccctgcgccaggccctcggccacaaccgc
caggccgagcccaaggccgcaccgtccgaagcgccgcgcctggtgggtgagagcccggcg
atgcagcgcctccgccggctcatcacccaggtggccggcagcgaggccagcgtgcttatc
ctcggcgagtccggcaccggcaaggaggtcgtcgcgcgccagattcacgagctctccgag
cgccgcaatgggcccttcgtgccggtgaactgcggcgccatcccgggggagctgctggag
agcgagctgttcggccatgagaagggcgccttcaccggcgccatctcctcgcgccagggg
cgcttcgagctcgctcagggtggcacgctcttcctcgacgagatcggtgacatgagcctg
cccatgcaggtgaagctcctgcgcgtgctgcaggagcgcaccttcgagcgcgtcggctcc
aaccgcacccagcacgccgatgtgcgtatcctcgcggccacccaccgcgatctggaggcg
cgcatcgtcgagggcgagttccgcgaggacctcttctaccgcctgaacgtcttccccctg
gagctgccaccgctgcgccggcgcgcctcggacatccccgtgctgatcgaggaactggtg
cgccggatcgaggacgagggccgcggctcggtgcgcatctcgccccgggcgctgtcggtg
atgagccagtatccctggcccggcaacgtgcgcgagcttgccaatgtggtggagcgcctg
gctatcctcgccccctacggcgaggccgcgctggacgacctgccggagaagctcctcgcc
gccgccgaggagctgccggaggacgccgggatcgctgcggaggacgaggcgcacgagccc
cccaccaacggccacgcccatccgggtggcctgggtcagatccgcgtcgcccccgacggc
atcgacctgcgcgggatcatgggcgacctcgagcagcgcctcatccgcgaggccctggac
gccagcgagggcgtcgtcgcccaggcggcgaagctgctcaacctgcgccggaccacgctg
gtggaaaagctgcgcaagtacgatatccagcgggatacagcctga
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