Sediminicurvatus halobius: LMH63_09880
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Entry
LMH63_09880 CDS
T09389
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shai
Sediminicurvatus halobius
Pathway
shai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMH63_09880 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shai03019
]
LMH63_09880 (recQ)
03400 DNA repair and recombination proteins [BR:
shai03400
]
LMH63_09880 (recQ)
Enzymes [BR:
shai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMH63_09880 (recQ)
Messenger RNA biogenesis [BR:
shai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMH63_09880 (recQ)
DNA repair and recombination proteins [BR:
shai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LMH63_09880 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
DivIC
HHH
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEX76277
LinkDB
All DBs
Position
complement(2177635..2179485)
Genome browser
AA seq
616 aa
AA seq
DB search
MAVTPDTDLSTAASPPTAESTLQSVFGYSSFRGRQREIIDTVCAGRDALVLMPTGGGKSL
CYQIPALLRPGVAVVVSPLIALMQDQVEALRHNGVRAAALNSGLDPAERRATERALDAGE
LDLLYVAPERLLSDSFLERLARLPIALFAIDEAHCVSQWGHDFRPEYLQLGVLGERFPGV
PRMALTATADERTREEIRRQLLPADAAVFIASFDRPNLTYRVGLKDRARDQLLRFIRERH
AGASGIVYCMSRKATEQIADFLAGHDIPAVPYHAGLDAATRRRHQERFLREEGLVVVATV
AFGMGIDKPDVRFVAHLDLPKTLEAYYQETGRAGRDGLPAEAWLIYGLQDIYRLRQMIAA
SEAPEAHKRQERQRLEALLGYCEATGCRRPVLLGHFGESHPGGCGRCDNCEQPPETWDAT
EAARMALSCVYRTGQRFGAAHVVDVLLGRTSERIQRLGHDRLSTFGIGTGHDKGTWQSVL
RQLLAGGYLEADPEGHGGLRLARGCRPLLRGEATLQLRRDLPAARKVRSERAAKVRPEDI
AVDSAAWAALRSKRRAIAEEEGVPPYVIFHDATLLAMLHERPRTLQEFAALPGVGEHKLE
RYGEAFLEALSELERS
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcactcccgacacggatctgtcgaccgccgccagcccgcctaccgctgaaagc
accctccagtccgtcttcggctacagcagtttccgcggccggcagcgagagatcatcgac
acggtctgcgccgggcgcgacgccctggtcctcatgcccaccggcggtggcaagtccctc
tgctaccagattcccgcgctgctgcgccccggcgtggcggtggtggtctcgcccctgatc
gcgctcatgcaggatcaggtggaggccctgcgccacaatggcgtgcgcgccgcggccctg
aactccggactcgatccggcggagcgccgggccacggagcgtgccctggacgccggcgag
ctggacctgctttacgtcgccccggagcggctgctgtcggacagcttcctcgagcggctg
gcacggctgcccatcgcgctcttcgccatcgacgaggcccattgcgtctcccagtggggg
cacgacttccgcccggagtatctgcagctcggcgtgctcggggaacgcttccccggcgtg
ccccgcatggcgctcaccgccaccgccgacgagcgcacccgcgaggagatccgccggcag
ctgctgcccgcggacgcggcggtattcatcgcgagcttcgaccgcccgaacctcacctat
cgcgtggggctgaaggaccgcgcccgggatcagctgctgcgcttcatccgcgaacgccac
gccggcgcctccggcatcgtctactgcatgtcgcgcaaggccaccgagcagatcgcggat
ttccttgccggccacgacatccccgccgtgccctatcacgccggcctcgacgccgccacc
cggcggcgccatcaggagcgcttcctgcgcgaggaggggctggtggtggtggcgacggtg
gccttcggcatgggcatcgacaagccggacgtccgcttcgtcgcccacctggatctgccg
aagaccctcgaggcctattaccaggaaacgggccgcgccgggcgcgacggcctgccggcc
gaggcctggctcatctacggcctgcaggacatctaccgcctgcgccagatgatcgccgcc
tccgaggccccggaggcgcacaagcgtcaggagcgccagcgcctggaggccctgctcggc
tactgcgaggccaccggctgccggcgcccggtgctgctcggccacttcggcgagtcccat
ccgggcggctgcgggcgctgcgacaactgcgagcagccccccgagacctgggacgccacc
gaggccgcccgcatggcgctctcctgcgtctaccgcaccggccagcgtttcggcgccgcg
cacgtggtagacgtgctcctcggtcgcaccagcgagcgcatccagcgccttggccacgac
cggctgagtactttcggcatcggcaccgggcacgacaagggcacctggcagtcggtgctg
cgccagctactggccgggggctatctggaggcggacccggagggccacggcggcctgcgc
ctcgcccggggctgccggccgctcctccggggcgaggccaccctgcagctgcgccgggac
ctccccgcggcccgcaaggtgcgcagcgagcgggccgcgaaggtacgccccgaggacatc
gccgtggactcggcggcctgggccgccctgcgcagcaagcgccgcgccatcgccgaagag
gaaggcgtgccgccctacgtcatcttccacgatgccaccctgctcgccatgctccacgag
cgcccgcgcaccctgcaggagttcgccgccctgccgggcgtcggcgagcacaagctcgaa
cgctacggcgaggccttcctggaggctctgagcgagctggagcgaagctga
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