Spiribacter halobius: LMH63_10175
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Entry
LMH63_10175 CDS
T09389
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shai
Spiribacter halobius
Pathway
shai03030
DNA replication
shai03430
Mismatch repair
shai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMH63_10175 (dnaE)
03430 Mismatch repair
LMH63_10175 (dnaE)
03440 Homologous recombination
LMH63_10175 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shai03032
]
LMH63_10175 (dnaE)
03400 DNA repair and recombination proteins [BR:
shai03400
]
LMH63_10175 (dnaE)
Enzymes [BR:
shai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMH63_10175 (dnaE)
DNA replication proteins [BR:
shai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMH63_10175 (dnaE)
DNA repair and recombination proteins [BR:
shai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMH63_10175 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UEX76334
LinkDB
All DBs
Position
2236349..2239885
Genome browser
AA seq
1178 aa
AA seq
DB search
MPAGFVHLHLHTEFSLIDGIVRVKPLVQAAASSGMPAVAVTDQGNLFGMVKFYRAALAAG
VKPLIGADLRIAAPEGKGHDVMTFLCMDDTGYGSLTRLITASYLEGQGSEGLPVVQRAWL
EQWHEGLIALSGAARGDVGRALVAGQESLARERLDWWTALLGDRYYLELQRTGRPGDEDQ
VHGAVALAAAADVPVVATNDVRFLQREDFEAHEARVCIHEGRVLHDERRPRRYSEEQYLR
GPEEMAELFADIPESLENTLAIAQRCNLSLTLGQNVLPDFPVPAGMGIDDYLRTEAEAGL
ERRLARIIPADAEDPEGTRRYYRERLERELGVISQMGFPGYFLIVADFIRWAKQQDIPVG
PGRGSGAGSLVAYALDITDLDPLRYDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDYVA
DRYGREKVSQIATHGTMAARAVVRDVGRVLGHAYGYVDRIAKLIPFELGMTLEKALAQEE
DLRALYDGDEEVRTLLDLARRLEGLSRNVGKHAGGVVIAPSDLTDFAPLYCEPGGGGLAT
QFDKDDVEAVGLVKFDFLGLRTLTIIDWTVRAVNAIRAGRGESALDIGDIPLDDPGTFEL
LKDCQTTAVFQLESRGMKDLIRRLRPDSFEDIIALVALFRPGPLQSGMVDDFIDRKHGRK
PVAYPTPELHHDALRPILKPTYGVILYQEQVMQIAQAVGGYSLGGADLLRRAMGKKKPEE
MAKQRQIFLQGATAQGLQPAHAEGLFDLMETFAGYGFNKSHSAAYALLSYQTAWLKRHYP
AAFMAAVLSSDMDNTDKVVTLIDECRSMALAVEPPDVNRSAWMFQARDERTIVYGLGAVK
GVGHAAIEAVVEARDAGGPFADLFDLCRRIDLRRANRRVLEALIRSGSLDSLTPNRASAM
AWLGRALQAAEQQTRNRQLGQDDMFGLGSAAAEADTGSDLASVAEWPEQERLAAEKDTLG
LYLTGHPIEEHEAELGAIVSCRLKQAAAGAGGTAVAGEGNGHGRRREGERRVVVAGLVVA
LRARLTQSGKRLGFLTLDDRTARLEVILFGDAYQRYRHLLAKDRLLVVEGDLGYDEFSDG
YRVSAERVLDMTEAREAFARRLVIGVDAARAGNGFVPALREALTEYREGHCPVWIDYHGE
GAEARLRLGDDWRVRPTDDLVRRLESLVAPGAVRLDYS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccggccggcttcgtccatctgcatctgcacaccgagttctccctgatcgacggcatc
gtccgcgtcaagccgctggtgcaggcggcagcatcgtcgggcatgcccgcggtggcagtc
accgaccagggcaacctgttcgggatggtgaaattctaccgggcggcactggccgccggc
gtcaagccgctgatcggcgcggacctgcgcatcgccgcccccgaggggaaaggccatgac
gtcatgaccttcctctgcatggacgacaccggctacggctcgctgacgcggctgatcacc
gcgagctacctggaggggcagggcagcgagggcctgccggtggtgcagcgggcatggctg
gagcaatggcatgagggcctgatcgcgctctccggtgccgcccgcggtgacgtcggtcgg
gcgctggtggccgggcaggagtccctcgcccgggagcggctcgactggtggaccgcgctc
ctcggggaccgctactacctggagctgcagcgtaccggccggccgggggacgaggaccag
gtacacggcgccgtggccctggccgccgcggcggacgtgccggtggtggccaccaacgac
gtgcgcttcctgcagcgcgaggacttcgaggctcacgaggcgcgggtctgcatccacgag
gggcgggtgctgcacgatgagcggcggccgcgccgctacagcgaggagcagtatctgcgc
ggtcccgaagagatggcagagctgttcgccgacatcccggagtcgctcgagaacaccctc
gccatcgcgcagcgctgcaatctgtcgctcaccctcggccagaacgtgctgccggacttc
cccgtgccggccggcatgggcatcgatgactacctgcgcaccgaggccgaggccgggctg
gagcgccggctggcgcgcatcattccggcggatgccgaggacccggagggcacgcgccgc
tactatcgcgagcgtctggagcgcgagctcggcgtcatcagccagatgggctttccgggc
tacttcctgatcgtcgccgacttcatccgctgggcgaagcagcaggacatcccggtgggc
ccggggcggggctcgggcgcgggctcgctcgtcgcctatgcgctggatattaccgacctg
gatccgctgcgttacgaccttctgttcgagcgttttcttaaccctgagcgggtgtcgatg
cccgacttcgatgtcgacttctgcatggagaagcgcgaccgggtgatcgactacgtggcc
gatcgctacggccgcgagaaggtctcgcagatcgcgacccacggcaccatggccgcccgc
gcggtggtgcgtgatgtcggccgcgtgctcggccacgcctacggttacgtggaccgtatt
gccaagctcatacccttcgagctcggcatgaccctggagaaggcgctggcccaggaggag
gatctgcgcgccctctacgacggcgacgaggaggtgcgcacgctgctcgacctcgcgcgg
cggctggagggcctctcgcgcaacgtgggcaagcacgccggcggtgtcgtcatcgcgccc
tcggacctcaccgacttcgcgccgctctactgcgagccgggcggcggaggcctcgccacg
cagttcgacaaggacgacgtcgaggcagtgggtctggtgaagttcgacttcctcggcctg
cgcacgctcaccatcatcgactggaccgtgcgcgccgtgaacgccatccgcgcgggacgc
ggcgagtcggccctggacattggcgacatcccgctggacgaccccggcaccttcgagctg
ctgaaggactgccagaccaccgccgtcttccagctcgagtcccgcggcatgaaggatctg
atccgacgcctgcggcccgacagcttcgaggacatcatcgccctggtggcgctgttccgc
ccggggccgctgcagtccggcatggtggacgacttcatcgaccgcaagcacggccgcaag
cccgtcgcctacccgactccggagctccatcacgacgccctgcgcccgatcctcaagccc
acctacggcgtcatcctctaccaggagcaggtgatgcagatcgcccaggcggtgggcggc
tacagcctcggtggcgccgacctgctgcgtcgggccatgggcaagaagaagcccgaggag
atggccaagcagcgccagatcttcctccagggcgccacggcccagggcctgcagccggcc
cacgcggaaggcctcttcgacctgatggagaccttcgccggctacggcttcaacaagtcc
cactccgccgcctacgcactgctgtcctaccagaccgcctggctcaagcggcactatccg
gcggcgttcatggccgcggtgctgtcctcggacatggacaacaccgacaaggtggtgacc
ctcatcgacgagtgccggagcatggcgctcgccgtggagccgccggatgtcaaccgctcg
gcctggatgttccaggcccgggacgagcgcaccatcgtctacggcctgggcgcggtgaag
ggcgtcggccatgccgccatcgaggcggtggtggaggcgcgggacgcgggcgggccgttc
gccgatctgttcgacctctgccggcgcatcgacctgcgccgcgccaatcgccgcgtgctc
gaggcgctgatccgctccggcagcctggacagcctcacccccaaccgggccagcgccatg
gcgtggctcgggcgggccctgcaggccgccgagcagcagacgcgcaaccgccagctcggc
caggacgacatgttcggcctcggcagcgcggcggcggaggcggataccggcagcgatctg
gcgagcgtggcggaatggcccgagcaggagcggctcgcggcggaaaaggacacccttggc
ctctatctcaccgggcaccccatcgaggagcacgaggcggagctcggcgccatcgtcagc
tgccgcctcaagcaggccgccgccggcgccggcggcacggcggtggcgggcgagggcaac
ggccacggccgccggcgcgagggcgagcggcgggtggtggtggcgggcctcgtggtcgcc
ctgcgcgcccgcctgacccagagcggcaagcgcctcggctttctcaccctggacgaccgc
acggcgcgcctggaggtgatcctgttcggcgacgcctaccagcgctaccgccacctgctg
gccaaggaccgcctgctggtggtggagggcgatctcggctacgacgagttcagcgacggc
taccgggtgtccgccgagcgcgtgctggacatgaccgaggcccgcgaggcctttgcccgg
cgcctggtgatcggcgtcgacgccgcgcgcgccggcaacggcttcgtgccggccctgcgc
gaggccctcaccgagtaccgcgagggccactgcccggtgtggatcgactaccacggcgag
ggcgccgaggcccgcctgcgcctcggggacgactggcgcgtgcgccccaccgacgacctc
gtccgccgcctcgagtccctcgtcgcccccggcgccgtgcgcctcgactactcctag
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