Sediminicurvatus halobius: LMH63_18065
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Entry
LMH63_18065 CDS
T09389
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shai
Sediminicurvatus halobius
Pathway
shai03420
Nucleotide excision repair
shai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMH63_18065 (uvrD)
03430 Mismatch repair
LMH63_18065 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shai03400
]
LMH63_18065 (uvrD)
Enzymes [BR:
shai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMH63_18065 (uvrD)
DNA repair and recombination proteins [BR:
shai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LMH63_18065 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LMH63_18065 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
PAH
AAA_22
HGTP_anticodon
nSTAND_NTPase5
DUF3553
Motif
Other DBs
NCBI-ProteinID:
UEX77806
LinkDB
All DBs
Position
complement(3879620..3881779)
Genome browser
AA seq
719 aa
AA seq
DB search
MDVSDLIDPLNEAQREAVGAPLGRALVLAGAGSGKTRVLTHRAAWLVRVEGATPYNLLAV
TFTNKAAAEMRGRIEQLLGIPGRGMWVGTFHGLSHRLLRLHWQEAGLPQGFQILDSEDQR
RLVKRVMRDLELDESRWPVRQLQGFINARKDGGQRPEELDTGDPYTGQMARVYDAYERAC
RSAGVVDFAELMLRTVELLRGHPDLLTHYRRRFRHVLVDEFQDTNAIQYDWLRLLAGEDA
DVFIVGDDDQSIYGWRGARVENLQRFRRDYPDTQVRRLEQNYRSTQTILEAANTLIAHNS
DRLGKKLWTAGERGEPIALYAAFNEQDEARFVVERLRQMCEQEGFARSDFAILYRSNAQS
RTFEEALLGRGIPYRVYGGLRFFERAEIKDALAYLRLLANRDDSAAFERVINTPTRGIGN
RTVEAVRLAAREQGVSLWAAARGLAASRGALPARAAKALAAFLELIDGLAAELEGEPLPR
RVERTLEGSGLRAHVGKDRSDRGQDRLENLDELVSAAQTFEQDAEIDEGMDTLTAFLAHA
ALEAGEGQGGAWEDCVQLMTLHSAKGLEFPVVFLAGLEEGLFPHRMSVEEPGRLEEERRL
AYVGLTRARRHLVLTFAERRRLHGRDEYGIASRFIRELPAELVEEVRARFSVSQPAMAPA
ASAAAEPGFSLGQRVYHSRFGEGVVLDCEGSGANARVQVNFPDAGAKWLVAAYANLQPV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctccgacctcatcgatccgctcaacgaggcccagcgcgaggccgtgggcgcc
ccgctcgggcgcgccctggtgctggccggcgccggcagcggcaagacccgcgtgctcacc
caccgcgccgcctggctggtgcgggtggagggcgcgacgccctacaacctgctggcggtg
accttcaccaacaaggctgccgccgagatgcgcgggcgcatcgagcagctgctgggcatc
cccgggcgcggcatgtgggtcggcaccttccacgggctctcgcatcgcctgctgcggctg
cactggcaggaggccggcctgccccagggcttccagatcctcgacagcgaggatcagcgg
cggctggtcaagcgcgtgatgcgggatctggagctggacgagagccgctggccggtgcgc
cagctgcagggcttcatcaacgcccgcaaggacggtggccagcgtcccgaggaactggat
accggcgacccctacaccggccagatggcccgggtctatgacgcctacgagagggcctgc
cgcagcgccggggtggtggacttcgccgagctcatgctgcgtaccgtggagctgctgcgc
ggtcatccggacctgctcacgcactatcgccggcgcttccgccacgtgctggtggacgag
ttccaggacaccaacgccatccagtacgactggctgcgcctgctcgccggcgaggatgcg
gacgtgttcatcgtcggcgacgacgaccagtccatctacggctggcgcggcgcgcgggtg
gagaatctccagcgcttccgtcgcgactacccggacacgcaggtgcggcgcctggagcag
aactaccgctccacccagaccatcctcgaggcggcgaacacgctcatcgcccacaacagc
gaccgcctcggcaagaagctctggaccgccggcgagcgcggcgagcccatcgccctctac
gccgccttcaacgagcaggacgaggcccgcttcgtggtggagcggctgcgccagatgtgc
gagcaggagggctttgcccgcagcgacttcgccatcctctatcgctccaatgcccagtcc
cgcaccttcgaggaggcgctgctcggtcgcggcattccctaccgggtctacggcgggctg
cgcttcttcgagcgcgccgagatcaaggacgcgctggcctacctgcgcctgctggccaac
cgggacgacagcgccgccttcgagcgggtgatcaacacccccacccgcggcatcggcaac
cgcaccgtggaggctgtgcgtctcgccgcccgcgagcagggcgtgagcctctgggccgcg
gcgcgtgggctcgccgcgagccgcggagcactgccggcgcgggcggccaaggcgctggcc
gcctttctcgagctcatcgacgggctcgccgcggagctcgaaggcgagccgctgccgcga
cgggtggagcgcaccctcgagggcagcggcctgcgggcccacgtcgggaaggaccgctcc
gaccgcgggcaggatcgcctggagaacctggacgagctggtctcggcggcgcagaccttc
gagcaggacgccgagatcgacgagggcatggacaccctcaccgccttcctcgcccacgcc
gcgctggaggccggcgagggccagggcggggcctgggaggactgcgtccagctcatgacc
ctgcactcggccaagggcctggagtttccggtggtgttcctggcgggtctggaggagggg
ctgttcccccaccgcatgtccgtggaggagcccgggcgcctggaggaggagcgtcgcctc
gcctacgtcggcctcacccgcgcccgccggcatctggtcctcaccttcgccgagcggcgc
cgcctgcatgggcgggatgaatacggcatcgcctcgcgcttcatccgcgagctgccggcg
gagctggtggaggaggtgcgggcacgtttctcggtgagccagcccgccatggcgccggcg
gcctcggccgccgccgagcccggcttcagcctcggccagcgcgtctaccacagccgcttc
ggcgagggcgtggtgctggattgcgagggcagcggcgccaacgcccgggtgcaggtcaac
ttccccgacgccggcgccaagtggctcgtcgccgcctacgcgaacctgcagccggtctga
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