Sulfurospirillum halorespirans: SHALO_0090
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Entry
SHALO_0090 CDS
T04475
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shal
Sulfurospirillum halorespirans
Pathway
shal03410
Base excision repair
shal03430
Mismatch repair
shal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHALO_0090
03430 Mismatch repair
SHALO_0090
03440 Homologous recombination
SHALO_0090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shal03400
]
SHALO_0090
DNA repair and recombination proteins [BR:
shal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SHALO_0090
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SHALO_0090
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHALO_0090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ThrE_2
Motif
Other DBs
NCBI-ProteinID:
AOO63888
UniProt:
A0A1D7TFU3
LinkDB
All DBs
Position
96284..97867
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AA seq
527 aa
AA seq
DB search
MASLLTKEEIKRILQSRFENDECTRLNEIPKPSSLKDIARASKRIVHAMKNHERIAIVGD
YDVDGVISSVILSQFFDDLGVDYSLIIPNRFTDGYGLNPDIVAKLDVHVIITVDNGISAI
EAAHICKEQGIDLIITDHHSVPSILPDAYAIVNPKQEDCAFPHCEICGAQVAWYLVAALK
EELGVEYDLSSFLDLLCIAIMADMMALVGMNRVMVKKGIVELNHSKRAAFEAIKQYFGKA
TLEGDDISFLIAPLINSSGRMEDAIFSYEFLKSKNVNDALVKLDYIVSLNEARKEEERLL
FEATLPYVKEGENIIVAWGEEWHEGIVGIVASRLSKRFKKPAIVFSIRNEKAKGSARGIG
DVDILELIRSQEAILLGYGGHKGAAGVSIEIKHLEQFRANLEQASSHLNKEALEADNDLL
GEISADQIDFELLEILENQEPYGQKNPKPSFLLRNIAVKVDRLIGKDGQHLKLILQEGSN
ALEALFFNYDMKAKQGDHIDILFTVSRNDYRGLVTPQLLIKQIVKKY
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggctagtttgctgaccaaagaggagataaaacggattcttcaaagcaggttcgaaaat
gacgagtgcacccgtctaaacgagattcctaagccctcctctttaaaagatattgcgcgc
gcctcaaaacgtattgtccatgccatgaaaaatcatgaacgcattgcgattgtgggcgat
tacgatgtggatggcgtgatctcttcggtgattttaagccaattttttgatgatttgggg
gtggattactcgttgatcattcctaaccgttttaccgatggctatggcttaaatccagac
atcgttgccaaactggatgtgcatgtgattatcaccgtcgataacggcatctctgcgatt
gaagcggcgcacatttgtaaagagcaagggattgatcttatcatcaccgatcatcacagt
gttccttccatcttgcccgatgcgtacgcgattgtcaatcccaagcaagaagattgtgct
tttccgcattgtgaaatttgtggcgcgcaagtggcgtggtacttggtcgcagcactcaaa
gaagaacttggcgttgagtatgatctctctagctttttagacttgctgtgcatcgccatt
atggcagacatgatggcactggttgggatgaaccgcgtgatggttaaaaaagggattgtc
gagcttaaccactccaagcgtgccgcctttgaagcgatcaagcagtactttggtaaagca
accttggaaggcgatgatatttcatttttgatagcacctctgattaacagctcagggcgc
atggaagatgcgattttctcgtatgaatttttgaaatccaaaaatgtgaatgacgcactg
gttaaactcgattacattgtctcattgaatgaagcgcgcaaagaagaagagcggctttta
tttgaagccacgcttccgtacgtcaaagagggtgaaaatatcatcgtggcgtggggtgaa
gagtggcatgagggtatcgtagggatcgtcgcttcacggctttctaaacgctttaaaaag
cctgcgattgtcttttctattcgcaatgagaaagccaaagggagtgcgaggggcattggt
gatgtcgatattttagaactgattcgctcccaagaggcgatattgctcggttacggtggt
cataaaggggctgcgggtgtttcgattgagatcaaacatttggagcagtttcgtgccaat
ttagagcaagcatcgagccatttaaacaaagaagccttggaagcggataatgatctttta
ggcgaaatcagcgccgatcagattgattttgagttactcgaaattttggaaaaccaagaa
ccttacgggcaaaaaaacccaaaaccaagctttttactgcgcaatatcgcggtgaaagtc
gatcgattgattggtaaagatggacaacatttgaagcttattttgcaagagggaagtaat
gcccttgaagcactgtttttcaattacgatatgaaagccaaacaaggcgatcacatcgac
attctcttcaccgtttcgcgcaatgactatcgagggcttgtgacgcctcagcttttaatt
aagcagatcgtgaaaaagtattag
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