Sulfurospirillum halorespirans: SHALO_0593
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Entry
SHALO_0593 CDS
T04475
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shal
Sulfurospirillum halorespirans
Pathway
shal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHALO_0593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shal03021
]
SHALO_0593
03019 Messenger RNA biogenesis [BR:
shal03019
]
SHALO_0593
Transcription machinery [BR:
shal03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SHALO_0593
Messenger RNA biogenesis [BR:
shal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SHALO_0593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Mor
S1CSD-TOTE-2
Spore_III_AA
OB_RNB
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOO64382
UniProt:
A0A1D7TH80
LinkDB
All DBs
Position
complement(600659..602074)
Genome browser
AA seq
471 aa
AA seq
DB search
MNDQTNNKEGTMSGNTPTSNNQPCANTTQPNGNTNGNGQAKPTHYNKTRTHVPVDGYKIE
GLRTTPLEKLLEIATELGIENPNELKRQDLMFEILKSQVNQGGFILFTGILEIAGEGYGF
LRATDANFSDSANDAYVSSTQVKKFALRTGDIVTGQVRPPKDQERYYALLKIEAINYLPL
VESKKRPLFENLTPLYPTEKIKLEYDPMKITGRVLDLFTPLGKGQRGLIVAPPRSGKTEL
MKELAHGISRNHPEAELIVLLVDERPEEVTDMQRCVQGEVYSSTFDMPASNHVRVANLVI
EKAKRRVEMGKDVIILLDSITRLARAYNTVTPSSGKVLSGGVDANALHKPKRFFGAARNI
EFGGSLTIISTALIETGSRMDEVIFEEFKGTGNSEIVLDRNISDRRIYPAINIMKSGTRK
EELLLTPDRLQKIWALRSAISQMDDIEALKFLYAKMLKTKDNEELLSIMND
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcaaactaacaacaaagaaggcacaatgagcggaaacactcctacctcgaac
aatcaaccctgcgcgaatacaacccaacccaacgggaacacgaacggaaacggacaagca
aaaccaacccactataacaaaacacgaacgcacgttcccgtcgatggctacaaaatcgaa
ggtcttagaaccacgcctctggaaaaactcttagagatcgcgacggaacttggcattgaa
aatcccaacgaattaaaacgccaagatttgatgtttgaaattttaaaatcgcaagtcaac
caaggcggattcattctgtttacgggtattttggaaattgcgggtgaagggtatggtttc
ttacgtgccacagacgccaacttctcagacagtgccaatgacgcctacgtcagcagtacg
caagttaaaaagttcgcacttcgtacgggtgacatcgtcacaggacaagtcagacctcct
aaagatcaagagcgttattacgcccttcttaaaatcgaagcgatcaactatcttcctctt
gttgagagcaaaaaacgccctctttttgaaaacttaaccccgctgtatccaaccgaaaaa
atcaaacttgaatacgatccaatgaaaatcacaggacgcgtgctcgatcttttcacgcct
cttggaaaaggtcaaagaggtttgatcgttgcacctcctagaagtggtaaaaccgaactg
atgaaagagctcgcacacggtatctcacgcaatcatcctgaagcagagctgatcgtttta
ctggtcgatgaacgacctgaagaggtgaccgatatgcaacgttgtgttcaaggcgaagtc
tacagctcaacctttgatatgcctgcgtccaaccatgttcgcgttgccaacctcgtcatt
gaaaaagccaaaagacgcgttgaaatgggcaaagatgtcatcattcttttagattcgatc
acaagacttgctcgtgcgtacaacaccgtaacaccatcgagcggaaaagtactcagcggt
ggtgtggatgccaacgcattgcacaaaccaaaacgcttttttggtgcggcaagaaacatc
gaatttggtggcagtttgactatcatttcaaccgcattgatcgagactggaagtagaatg
gacgaagtgatctttgaagagttcaaaggtacgggtaacagcgaaatcgttctggataga
aatatctccgatagaagaatttaccctgcaattaacattatgaaatcaggaacgagaaaa
gaagagcttcttcttacccctgatcgtcttcaaaaaatctgggcacttcgtagtgctatc
agccaaatggatgacattgaagcgcttaaattcttgtatgctaaaatgcttaaaaccaag
gacaatgaagaactcctctctattatgaatgactag
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