Sulfurospirillum halorespirans: SHALO_1993
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Entry
SHALO_1993 CDS
T04475
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shal
Sulfurospirillum halorespirans
Pathway
shal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHALO_1993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shal03400
]
SHALO_1993
Enzymes [BR:
shal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHALO_1993
DNA repair and recombination proteins [BR:
shal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SHALO_1993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOO65764
UniProt:
A0A1D7TLG7
LinkDB
All DBs
Position
complement(2009781..2012750)
Genome browser
AA seq
989 aa
AA seq
DB search
MLQAACYEFFQTKNDLQLLGVKGEKEAFLASEVALLLGKKSYLLPDLRANLGDDLLSFHE
EMVELLRSLHAYYKDPSSKKILIAPIRTLLTPLPKAELFSTFSLEFGMRLYLERFREQMF
YWGYLAVDVVQGKGEISIRGDIIDVFPPDSEKALRLSLFDDEVESIRFFDCESQKSEKEE
LESYTLFPALFALDEERHTQMQRRIDSLKSDSFTKDIHSLGLWVLGESGAVYTESFKTYL
SADALEELGEIALFDEEGAQKLQNLPCIPEAKHYREIAPSNIKTFLELHQAKKITVLARN
EVLLRMVDVDSLHVKWVQSERIVNIMNAEEIILSLNKPTTKIKRKRANIVLDELKNGDYV
VHENYGIGIFKGLTQATVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYIGESGGLVSVD
RLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVDGLSLAMEEGEMVQFEADAGFAYTE
DQKRVIGEILSDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATIRNGFQALLIAPTTLLCS
QHFKSLSSRFAKYNIKVAQLDRFTTAAQKQVILKELKSGALQVCVGTHSLFEVELFNPAL
VVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPNDRED
VRTFVKEYDAKVIKEAIIREMRRGGQVFFVHNRIATIEAKRKELLSMMPSLRILTLHSEI
SATVTEKEMLHFEEKAYDVLLSTSIIESGIHIPNVNTILIDSADHFGMADLHQLRGRVGR
SRRQGFCYFLVKDKEELSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG
HLKNIGYSLYLRMLEDAINSLMGKTPIASREVDIKLSISAFISDSYIPEDRVRLELYRRL
SKCGSIHDVLEIEEEMVDRFGKLDVPTKQFLQLIEIKILATAQNIVLVSNYAQNITIKYE
DEKKITLQSRSRDDDDVIATVLAQLRGKA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagctgcgtgttatgaattttttcagaccaaaaatgacctccaacttttaggt
gttaaaggcgaaaaagaggctttcttagcctctgaagtcgctctgcttttaggtaaaaaa
agctatctcttacccgatcttagagccaatctaggcgatgatctactctcctttcatgaa
gagatggtggagcttttacgctcattgcatgcgtactacaaagatccttccagcaaaaag
atcttaattgccccgattcgaaccctcttaacgccgcttcccaaagccgaactatttagt
acattttcgttagaatttgggatgcgtctgtatctggagcgctttcgtgagcagatgttt
tactggggttatctcgcggtcgatgtggtacaaggcaaaggtgaaatctccattcggggt
gacatcatcgatgttttccccccagatagcgaaaaagcgttgcgtctgagtctttttgat
gatgaagtagagagcattcgtttttttgactgtgaaagccaaaaaagtgagaaagaagag
ttggagagctataccctttttccagccctttttgcccttgatgaagagcgtcatacccag
atgcaaaggcgtatcgattcgcttaaaagcgatagctttactaaagacattcactctctt
ggactttgggtcttaggcgagagtggcgctgtgtacacggaaagttttaaaacctatttg
agtgcagatgcgctcgaagagctgggtgaaatcgctctgtttgatgaagaaggagcccaa
aaacttcaaaaccttccttgcattcctgaagcaaaacattaccgtgaaattgcgcctagc
aatatcaaaacatttttagaactccatcaagcaaagaagattacggttctggcacgaaat
gaagttttgcttcgtatggtggatgtggattctttacatgtaaagtgggttcagagtgag
cgcattgttaacattatgaacgcggaagagatcattctctccctcaataagccaaccacg
aaaatcaaacgaaaacgtgccaatattgtcctcgatgagcttaaaaatggcgattatgtc
gtgcatgaaaactatggtattggtatttttaaagggttaacccaagcgaccgtgcttggt
gcgaccaaagattttgttttgatcgaatatttgggcgatgacaagcttttattgcccgtt
gagaatttacatgtaatcgatcgttacatcggcgaaagcggtggtttggtcagtgtggat
cgccttggaaaaggcagtttccaaaaactaaaagccaaaaccaaagagcgactgttagaa
attgccagcgaaatcatcgctattgccgccaagcgtgagatggttgatggactaagccta
gccatggaagagggcgaaatggttcagtttgaagcggacgctggatttgcctacacggaa
gatcaaaaacgggtcattggcgaaattctgagcgattttaaaagcggtaaaatgatggat
cgacttttaagtggtgatgtcggttttggtaaaacagaagtcgcgatgaatgccattttt
gcgaccattcgaaatggttttcaagccctgttaattgcccctaccacgcttttatgttcg
caacactttaaaagtctctcatcgcgttttgccaagtacaacatcaaagtagcacaactc
gatcgttttacgactgcggcgcaaaagcaggtcattttaaaagagcttaaaagtggtgct
ttgcaggtgtgtgtgggaacgcattcactttttgaagtcgaactgttcaatccagcgctt
gttgtggttgacgaagagcataaatttggtgtaaagcaaaaagagaagcttaaaaatttc
cgtgaaaacgttcatattctctccatgagtgccacgcccattcctcgaagtctcaatatg
gcgctcagttccatcaagcagtactcccaactgctcacacctcccaatgacagagaagat
gtgcgaacctttgtgaaagagtacgatgccaaagtgattaaagaggcgattattcgcgag
atgagacgtgggggtcaagtcttttttgttcacaatcgcatcgcgaccatcgaagctaaa
cgcaaagagctactctccatgatgccaagtcttcgcatcttaacacttcactcagaaatt
agcgcgaccgtaaccgaaaaagagatgttgcactttgaagagaaggcgtacgatgtgctt
ttgagcacttccatcatcgaatcaggcattcatattcccaatgtgaatacgattcttatc
gactccgccgatcattttggtatggcagatttgcaccaacttcgtggtcgtgtgggacgc
tcacggcgtcaaggcttttgctactttttggtgaaagataaagaagagctctctgagtcg
gctaaaaaacgccttattgcccttgagtctaattcgtatctgggcagtggctccatcctt
gcgtatcatgaccttgaaatcagaggtggcggtaacttggttggtgaagctcaaagtggg
catctgaaaaacatcggatactctttgtatttacgaatgctcgaagatgcgattaactcc
ttgatgggtaaaacaccgattgcttcgcgcgaagtggacatcaagctctcgatcagtgcg
tttatcagcgatagttacattcccgaagatcgcgtccgtttagagctttacagacgtttg
agtaaatgtggaagtatccatgatgtcttagagatcgaagaagagatggtggatcgtttt
ggcaagcttgatgttccaacaaaacagtttttgcagcttatcgagattaaaattttagcg
acagctcagaacatcgtgctcgtttccaattacgcccaaaacattacgatcaaatacgaa
gatgagaaaaaaataaccttgcaatcacgcagtcgtgacgatgatgatgtcatcgcaacc
gtgctagctcagctaagaggcaaagcatga
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